Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_F14
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   1.2  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   2.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   4.8  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   6.3  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   6.3  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   6.3  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   8.3  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   8.3  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   8.3  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   8.3  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 98  RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 226
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 253 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 158
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = -2

Query: 674 PDXQIPDSKHQPPPXLTSXSI-NPLTPX*K---EFAPGLKPPLSSEAPSAYXTPSSLGMX 507
           P    P +  QPPP  +S ++ NP  P        AP L P  ++   S    P+   + 
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424

Query: 506 KGVPP 492
              PP
Sbjct: 425 PSAPP 429


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 463 KLRALLVVIPRILRSPPPTHPLIEDV 386
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
 Frame = -2

Query: 677 QPDXQIPDSKHQPPPXLTSXSINPLTPX*KEFAPGLK--PPLSSEAPSAYXTPSSLGMXK 504
           Q D    D K   PP     S N  T   K  +PG    PP   E P+   TP    + +
Sbjct: 255 QQDQSTYDQKVLMPPASYLSSPNQYTL--KNVSPGNPACPPFLYEHPNPQLTPEMFDVKQ 312

Query: 503 GVPPP 489
           G P P
Sbjct: 313 GSPIP 317


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 490 GGGTPLXMPSDEGVXYADGASDDNGGFNPGAN 585
           G GT +    D  V Y      +NG F PG N
Sbjct: 238 GNGTQMAFYDDPNVLYVSLHRYENGRFYPGTN 269


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 140 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 42
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 468 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 382
           + SF PY S F A   P L ++PS+  +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -3

Query: 352 KVKIADNNLVTHKELALKVSSIIGTRVHVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 173
           K K+ D   V  K   +  +S   T+  V +   YF   PF+ V+       +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 172 LSASIQASLPSSEIYRQL 119
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 638 PPXLTSXSINPLTPX*KEFAPGLKPPLSSEAPSAYXTPSS 519
           P    + S+NP TP     +P + PP+S+ +P     P S
Sbjct: 264 PLNYQNSSLNPSTPSPFGGSPVMHPPVSNLSPRTPAVPMS 303


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 113 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 214
           ++Q A+ LG   RS  RC  KSSF+    + DVV
Sbjct: 33  LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,882
Number of Sequences: 5004
Number of extensions: 50651
Number of successful extensions: 147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)