Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_F14
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 33 0.17
01_05_0014 - 17162664-17163500 30 2.2
07_01_0862 - 7172083-7172931 29 2.8
12_01_0302 - 2286171-2286341,2286747-2286968 29 3.8
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.0
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.0
01_06_0146 + 26969011-26969995,26970878-26970930 29 5.0
11_02_0038 - 7631462-7634428,7635975-7636250 28 6.6
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505... 28 6.6
09_04_0220 - 15813809-15815380 28 8.7
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 8.7
02_01_0158 - 1103461-1104186 28 8.7
>12_02_1174 - 26696869-26698191
Length = 440
Score = 33.5 bits (73), Expect = 0.17
Identities = 23/71 (32%), Positives = 27/71 (38%)
Frame = -2
Query: 701 PPXXXRXXQPDXQIPDSKHQPPPXLTSXSINPLTPX*KEFAPGLKPPLSSEAPSAYXTPS 522
PP +P + P K QPPP L P P P +KPP+ P P
Sbjct: 128 PPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPP-PPRPPSVKPPVVQPKPQ---PPP 183
Query: 521 SLGMXKGVPPP 489
SL PPP
Sbjct: 184 SLQPPSPPPPP 194
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/71 (30%), Positives = 26/71 (36%)
Frame = -2
Query: 701 PPXXXRXXQPDXQIPDSKHQPPPXLTSXSINPLTPX*KEFAPGLKPPLSSEAPSAYXTPS 522
PP R + K QPPP L S P P P +KPP+ P P
Sbjct: 161 PPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPP---TRPPSVKPPVVQPKPQ---PPP 214
Query: 521 SLGMXKGVPPP 489
+L PPP
Sbjct: 215 TLPPPSPPPPP 225
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/74 (27%), Positives = 23/74 (31%)
Frame = -2
Query: 710 SSHPPXXXRXXQPDXQIPDSKHQPPPXLTSXSINPLTPX*KEFAPGLKPPLSSEAPSAYX 531
S PP QP + PPP S+ P K P PP S P
Sbjct: 169 SVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPPTV 228
Query: 530 TPSSLGMXKGVPPP 489
P + G V P
Sbjct: 229 PPRTPGDTPAVVEP 242
>01_05_0014 - 17162664-17163500
Length = 278
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = -2
Query: 677 QPDXQIPDSKH-QPPPXLTSXSINPLTPX*--KEFAPG--LKPPLSSEAPSAYXTPSSLG 513
QP +P S PP + NP P + +P +K + ++P+ TP LG
Sbjct: 47 QPLATVPGSLQIWSPPASSLVRPNPPRPHSAARSLSPRHVIKTKIRGDSPARQPTPGELG 106
Query: 512 MXKGVPPP 489
+ K PPP
Sbjct: 107 LLKAAPPP 114
>07_01_0862 - 7172083-7172931
Length = 282
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/74 (27%), Positives = 27/74 (36%)
Frame = -2
Query: 704 HPPXXXRXXQPDXQIPDSKHQPPPXLTSXSINPLTPX*KEFAPGLKPPLSSEAPSAYXTP 525
+PP +P +P P P L PL P P K PL +P+A
Sbjct: 172 YPPPLPPKKKP---LPPPSPPPQPPLPEKENTPLPPL---LLPPKKKPLPPPSPTAAAKE 225
Query: 524 SSLGMXKGVPPPYF 483
+ + PPP F
Sbjct: 226 EPIELEHAAPPPPF 239
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 79 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 180
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 71 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 217
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 238 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 59
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 58 ILHSF 44
+LHSF
Sbjct: 1408 LLHSF 1412
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = -2
Query: 713 ASSHPPXXXRXXQPDXQ--IPDSKHQPPPXLTSXSINPLTPX*KEFAPGLKPPLSSEAPS 540
A SHPP D P + PPP L + + P TP + P+ S+AP+
Sbjct: 19 AQSHPPPPTPHPATDPPPISPQNPTPPPPPLPASAAAPTTPS-PNHSGDPSRPIPSQAPA 77
Query: 539 AYXTPSS 519
P++
Sbjct: 78 PPPPPTA 84
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -3
Query: 271 HVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQ 155
H+ CYF P + + +R + NKT +LS+ ++
Sbjct: 579 HLSREECYFDQLPLEPTTWSKLRRISIVNKTDMLSSVVE 617
>08_02_0743 -
20647440-20647927,20647997-20648426,20650127-20650570,
20650639-20650692
Length = 471
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/79 (25%), Positives = 27/79 (34%)
Frame = -2
Query: 725 FXXXASSHPPXXXRXXQPDXQIPDSKHQPPPXLTSXSINPLTPX*KEFAPGLKPPLSSEA 546
F A PP R P + P++ PP P +P + P K P+S
Sbjct: 78 FRADAPDAPPKRGRGRPPKPRDPNAPPPPP--------KPSSPRPRGRPPKSKDPISDAI 129
Query: 545 PSAYXTPSSLGMXKGVPPP 489
P + P PPP
Sbjct: 130 PKSRGRPPKKAKTAPAPPP 148
>09_04_0220 - 15813809-15815380
Length = 523
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Frame = -3
Query: 313 ELALKVSSIIGTRVHVFDPSCYFSTPPFDTV----LYDNIRTVLKDNKTALLSASIQASL 146
EL V+ ++G F P CYF + + +YD ++ L + A + S
Sbjct: 29 ELRAAVARLLGRATRAFSPYCYFDVTETEGMGTNEIYDAVQLYLSSSAAPAAGARLTLSR 88
Query: 145 P 143
P
Sbjct: 89 P 89
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 439 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 350
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
>02_01_0158 - 1103461-1104186
Length = 241
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 544 GASDDNGGFNPGANSFXYGVRGLMEXDVXSGGG 642
G +GG PG F G G M D +GGG
Sbjct: 112 GGGRRSGGGGPGGGCFKCGESGHMARDCFNGGG 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,960,602
Number of Sequences: 37544
Number of extensions: 403555
Number of successful extensions: 1236
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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