Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_F13
         (1143 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    27   1.0  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   3.1  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   4.1  

>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = +3

Query: 69  PFCGGPPLWKGGEXPXLMKXPGAPGPXNPXXPKGPPXXLXXXG 197
           PF  GPP       P  M  P  PG   P  P  PP  +   G
Sbjct: 66  PFTAGPPKPNISIPPPTMNMPPRPGMI-PGMPGAPPLLMGPNG 107


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = +3

Query: 27  LKXXTPGGLXPXYXP-FCGGPPLWKGGEXPXLMKXPGAPGPXNPXXPKGPP 176
           ++   P G  P   P     PP  +G + P +M   G P P  P  P G P
Sbjct: 228 MRPQMPPGAVPGMQPGMQPRPPSAQGMQRPPMM---GQPPPIRPPNPMGGP 275


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 129 PGAPGPXNPXXPKGP 173
           PGAPGP  P   +GP
Sbjct: 410 PGAPGPKGPRGYEGP 424


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,498
Number of Sequences: 2352
Number of extensions: 9302
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 128346558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)