Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_F07
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   3.6  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    26   4.8  

>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 140 PPISHRRLHLEKGARSTCPAERLPTKPHRAPPHRLHETYGTAMRAES 280
           P +S     L++  +S C     P+    APP +L+ +Y + + + S
Sbjct: 375 PELSASSAELDEKLKSQCNVSPSPSNISDAPPSKLNRSYSSPLASIS 421


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 94  PERKKGRREGPRSFTSPNFSQE 159
           P +KKG  +GP SF +P + ++
Sbjct: 45  PVKKKGSAKGPPSFVTPEYIEK 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,397
Number of Sequences: 5004
Number of extensions: 37511
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)