Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_F07
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798 30 2.2
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 29 2.9
03_06_0713 - 35687672-35689219 29 2.9
12_02_0147 + 14403046-14403285,14403371-14404078,14404145-14404702 29 3.8
12_01_0633 - 5241098-5241283,5241361-5241453,5241555-5241615,524... 29 5.0
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 29 5.0
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 29 5.0
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 28 6.6
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 28 8.7
04_03_0171 + 12223269-12223508,12223594-12224262,12224399-12224899 28 8.7
03_02_1036 + 13573160-13573243,13573361-13573684,13573880-135741... 28 8.7
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 28 8.7
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266... 28 8.7
>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
Length = 289
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 119 KDRGPSPPPISHRRLHLEKGARSTCPAER-LPT-KPHRAPP 235
K+ P PPP +++RL+ + G+ A+ P+ KP R PP
Sbjct: 45 KEEAPPPPPANNKRLNPQGGSNRKKKADAGTPSKKPKRQPP 85
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 122 DRGPSPPPI-SHRRLHLEKGARSTCPAERLPT 214
DRG SPPP+ H R G + C LPT
Sbjct: 278 DRGDSPPPLPDHLRCRRSDGKKWRCQNRALPT 309
>03_06_0713 - 35687672-35689219
Length = 515
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 137 PPPISHRRLHLEKGARSTCPAERLPTKPHRAPPHRLHETYGTAM 268
P +SH +++ RST PA R R PP R H G A+
Sbjct: 4 PATVSHTTCAIQRRRRSTAPARR------RGPPSRRHPHSGAAL 41
>12_02_0147 + 14403046-14403285,14403371-14404078,14404145-14404702
Length = 501
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 76 CRTPAPPERKKGR-REGPRSFTSPNFSQETTP*KRRAK 186
C++P+P RKKG EG + + P ET P RR+K
Sbjct: 54 CQSPSPKRRKKGNGEEGDKDYIPP-IEGETAP--RRSK 88
>12_01_0633 -
5241098-5241283,5241361-5241453,5241555-5241615,
5241703-5241813,5241960-5242145,5242229-5242590,
5242730-5243152,5243159-5244382,5244468-5244707
Length = 961
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 76 CRTPAPPERKKG-RREGPRSFTSPNFSQETTP*KRRAK 186
C++P+P +RKKG EG + + P ET P RR+K
Sbjct: 54 CQSPSPKKRKKGDGEEGDKDYIPPK-EGETAP--RRSK 88
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 131 PSPPPISHRRLH-LEKGARSTCPAERLPTKPHRAP 232
P PPP++ H L+ A + A+RLP RAP
Sbjct: 233 PPPPPLAPTTRHRLDTAAATATVAQRLPPSEARAP 267
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 130 SFTSPNFSQETTP*KRRAKHL 192
+F SP ++ ETTP K++A+HL
Sbjct: 389 AFESPAYTHETTPRKQQAEHL 409
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 378 HRSHLAPLHHRTNSRVPGRPRTR 446
H S L+P +RTN++ G+PRTR
Sbjct: 466 HNSELSPSQNRTNAQT-GKPRTR 487
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/56 (35%), Positives = 22/56 (39%)
Frame = -1
Query: 405 GEAVQGGSCAPLTVCLPRRGXTGFSRG*NPVLTSVRVPPKARLSARIAVP*VSCSR 238
GE V GS APL V G G +PV R P +A L P SR
Sbjct: 425 GEFVSAGSKAPLEVVSVEDGEEVNQAGGSPVYAQSRSPIRAPLGVSFGDPKAQNSR 480
>04_03_0171 + 12223269-12223508,12223594-12224262,12224399-12224899
Length = 469
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 76 CRTPAPPERKKGR-REGPRSFTSPNFSQETTP*KRRAK 186
C +P+P RKKG EG + + P ET P RR+K
Sbjct: 54 CPSPSPKRRKKGNGEEGDKDYIPPK-EGETAP--RRSK 88
>03_02_1036 +
13573160-13573243,13573361-13573684,13573880-13574143,
13574662-13574793,13574919-13575620
Length = 501
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -2
Query: 383 PVRRSRCVSRDEVXRDFPGDEIPS*HQYGYRLRRDFRRASR 261
PV RSR SR + GD+ + Q GY RR F RA R
Sbjct: 333 PVLRSR--SRADRLACVGGDDDDADRQLGYSARRSFTRAGR 371
>02_05_0481 +
29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 252 VSCSRCGGARWGLVGSRSAGQVLRAPF 172
V S CG + WG+V SR G L+A F
Sbjct: 812 VLVSFCGVSYWGVVNSRQDGVPLKADF 838
>01_06_0645 +
30826267-30826307,30826403-30826454,30826580-30826659,
30826804-30826882,30826962-30827045,30827131-30827276,
30827362-30827628,30827825-30827907,30828162-30828271,
30828544-30829159,30829471-30829620,30829700-30829800
Length = 602
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 64 RTGLCRTPAPPERKKGRREGPRSFTSPNFSQETTP 168
R G T P KKG E F FS TTP
Sbjct: 246 RHGRSTTSEAPSSKKGENEDDDDFNPRGFSTSTTP 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,980,749
Number of Sequences: 37544
Number of extensions: 364418
Number of successful extensions: 1214
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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