Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_F07
         (729 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   7.3  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   7.3  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   9.7  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +2

Query: 38   TDTRSRGGNGPGYVXXXXXXXXXXXEEKDRGPSPPPISHRRLHLEKGARSTCPAERLPTK 217
            TD    GG+G G+             E+    S PP S  RL     ARS+ PA   P+K
Sbjct: 1417 TDEPRPGGSGGGHTGPAGLISRWRDMEEGGRQSTPPASPARL-----ARSS-PASPTPSK 1470


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 82   TPAPPERKKGRREGPRS 132
            TP+PP R  GRR   RS
Sbjct: 1127 TPSPPPRAVGRRAEVRS 1143


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +2

Query: 131  PSPPPIS---HRRLHLEKGARSTCPAERLPTKPH 223
            PSP  +     RRL+L++  R       LPT PH
Sbjct: 1128 PSPRTVRARHERRLYLQRLYRQRAREGTLPTVPH 1161


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 545,653
Number of Sequences: 2352
Number of extensions: 11782
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)