Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_F07
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006629-1|AAK18925.1|  330|Caenorhabditis elegans Hypothetical ...    31   1.1  
AL117207-22|CAO82073.1|  505|Caenorhabditis elegans Hypothetical...    30   1.5  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   5.9  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   5.9  

>AC006629-1|AAK18925.1|  330|Caenorhabditis elegans Hypothetical
           protein F12E12.5 protein.
          Length = 330

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
 Frame = +2

Query: 113 EEKDRGPSPPPISHRRLHLEKGARSTCPAERLPTKPHRAPPHRLHETYGTAMRAESLALG 292
           +E  R  +P P S  RL     + S  P  +L   P   PP +L    GT+   E     
Sbjct: 177 KEALRSSAPAPTSSARLSPITVSTSGSPRAQLAISPQEKPPQKLSINLGTSPMIEEFCEQ 236

Query: 293 GTRTDVKTG--FHPRENPVXPRLGRHTVSGAQEP 388
            + T   T     P  +P  PR  R+ ++    P
Sbjct: 237 NSATLPNTDQQLSPTLSPNEPRF-RNLITSEPTP 269


>AL117207-22|CAO82073.1|  505|Caenorhabditis elegans Hypothetical
           protein Y60A3A.27 protein.
          Length = 505

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 149 KLGEVKDLGPSLLPFFLSGGAGVRHN 72
           +LG  KD G  LLPFFL G A  R++
Sbjct: 56  RLGIPKDTGTRLLPFFLDGVAKTRYD 81



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 149 KLGEVKDLGPSLLPFFLSGGAGVRHN 72
           +LG  KD G  LLPFFL G A  R++
Sbjct: 444 RLGIPKDTGTRLLPFFLDGVAKTRYD 469


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 263  AMRAESLALGGTRTDVKTGFHPRENPVXPRLGRHTVSGAQEPPCT 397
            A  A   A G +R+  K    P+E P+       TV+GA   P T
Sbjct: 1413 AKAANGSAQGSSRSTPKPKEEPKEEPMEKEDATETVNGATSEPAT 1457


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 263  AMRAESLALGGTRTDVKTGFHPRENPVXPRLGRHTVSGAQEPPCT 397
            A  A   A G +R+  K    P+E P+       TV+GA   P T
Sbjct: 1413 AKAANGSAQGSSRSTPKPKEEPKEEPMEKEDATETVNGATSEPAT 1457


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,894,848
Number of Sequences: 27780
Number of extensions: 255759
Number of successful extensions: 724
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)