Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_F07
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 92  GAGVRHNPVRYPPS 51
           G G  H+P ++PPS
Sbjct: 397 GTGREHDPAKFPPS 410


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 57  GVTDRVMSDSGASXXXXXXKRRTEVLHLPQFLTGD 161
           G+ DR   D+ A       + R  V  L QFLTG+
Sbjct: 629 GLRDRKYPDARAMGYPFDRQPRAGVETLAQFLTGN 663


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 139 SPNFSQETTP*KRR 180
           SPN ++ETTP K R
Sbjct: 782 SPNSTKETTPKKER 795


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 290 GGTRTDVKTGFHPRENPV 343
           G T TDV+ G   R NP+
Sbjct: 136 GDTVTDVEAGLASRTNPL 153


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 290 GGTRTDVKTGFHPRENPV 343
           G T TDV+ G   R NP+
Sbjct: 131 GDTVTDVEAGLASRTNPL 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,657
Number of Sequences: 438
Number of extensions: 3288
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)