Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_F06
(1209 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 38 0.002
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 38 0.004
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.7
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 28 2.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 3.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 24 3.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 24 4.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 24 6.2
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 24 6.7
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 38.3 bits (85), Expect = 0.002
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -3
Query: 652 PPPPPPXXXXKKXPPPPPPP 593
PPPPPP PPPPPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPPP 30
Score = 37.9 bits (84), Expect = 0.003
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -1
Query: 651 PPPPPPXXXKKXXPPPPPPP 592
PPPPPP PPPPPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPPP 30
Score = 35.5 bits (78), Expect = 0.015
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 651 PPPPPPXXXKKXXPPPPPPP 592
PPPPPP + PPPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPP 29
Score = 34.7 bits (76), Expect = 0.026
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 652 PPPPPPXXXXKKXPPPPPPP 593
PPPPPP PPPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPP 29
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.5 bits (83), Expect = 0.004
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -3
Query: 652 PPPPPPXXXXKKXPPPPPPP 593
PPPPPP PPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781
Score = 37.5 bits (83), Expect = 0.004
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -1
Query: 651 PPPPPPXXXKKXXPPPPPPP 592
PPPPPP PPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781
Score = 37.5 bits (83), Expect = 0.004
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -3
Query: 652 PPPPPPXXXXKKXPPPPPPP 593
PPPPPP PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782
Score = 37.5 bits (83), Expect = 0.004
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -1
Query: 651 PPPPPPXXXKKXXPPPPPPP 592
PPPPPP PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782
Score = 33.9 bits (74), Expect = 0.045
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 652 PPPPPPXXXXKKXPPPPPPP 593
PPPPPP PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780
Score = 33.9 bits (74), Expect = 0.045
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 651 PPPPPPXXXKKXXPPPPPPP 592
PPPPPP PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780
Score = 33.9 bits (74), Expect = 0.045
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 652 PPPPPPXXXXKKXPPPPPPP 593
PPPPP PPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783
Score = 33.9 bits (74), Expect = 0.045
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 651 PPPPPPXXXKKXXPPPPPPP 592
PPPPP PPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783
Score = 31.1 bits (67), Expect = 0.32
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 648 PPPPPXXXKKXXPPPPPPP 592
P PPP PPPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768
Score = 30.7 bits (66), Expect = 0.42
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 649 PPPPPXXXXKKXPPPPPPP 593
P PPP PPPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768
Score = 29.9 bits (64), Expect = 0.74
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 652 PPPPPPXXXXKKXPPPPPPP 593
P P PP PPPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPP 767
Score = 29.5 bits (63), Expect = 0.98
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 651 PPPPPPXXXKKXXPPPPPPP 592
P P PP PPPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPP 767
Score = 27.9 bits (59), Expect = 3.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 652 PPPPPPXXXXKKXPPPPPP 596
P PPP PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 8/28 (28%)
Frame = -3
Query: 652 PPPPPPXXXX--------KKXPPPPPPP 593
PP PPP KK PPPPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPP 317
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 10/30 (33%)
Frame = -1
Query: 651 PPPPPPXXXKKXXPP----------PPPPP 592
PPPPPP + PP PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 8/28 (28%)
Frame = -1
Query: 651 PPPPPPXXX--------KKXXPPPPPPP 592
PP PPP K PPPPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPP 317
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 12/32 (37%)
Frame = -3
Query: 652 PPPPPPXXXXK------------KXPPPPPPP 593
PPPPPP + PPPPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 652 PPPPPPXXXXKKXPPPPP 599
PP P P K PPPPP
Sbjct: 731 PPTPAPTPAVKHHPPPPP 748
Score = 27.9 bits (59), Expect = 3.0
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 651 PPPPPPXXXKKXXPPPPP 598
PP P P K PPPPP
Sbjct: 731 PPTPAPTPAVKHHPPPPP 748
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.9 bits (59), Expect = 3.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 652 PPPPPPXXXXKKXPPPPPP 596
PPPPPP K PP P
Sbjct: 1882 PPPPPPMALPKAGPPSAAP 1900
Score = 27.9 bits (59), Expect = 3.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 651 PPPPPPXXXKKXXPPPPPP 595
PPPPPP K PP P
Sbjct: 1882 PPPPPPMALPKAGPPSAAP 1900
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.8 bits (49), Expect(2) = 6.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 613 PPPPPPP 593
PPPPPPP
Sbjct: 946 PPPPPPP 952
Score = 23.8 bits (49), Expect(2) = 6.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 612 PPPPPPP 592
PPPPPPP
Sbjct: 946 PPPPPPP 952
Score = 23.8 bits (49), Expect(2) = 6.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 613 PPPPPPP 593
PPPPPPP
Sbjct: 947 PPPPPPP 953
Score = 23.8 bits (49), Expect(2) = 3.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 612 PPPPPPP 592
PPPPPPP
Sbjct: 947 PPPPPPP 953
Score = 21.8 bits (44), Expect(2) = 3.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 651 PPPPPPXXXK 622
PPPPPP K
Sbjct: 907 PPPPPPLPVK 916
Score = 21.0 bits (42), Expect(2) = 6.0
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -3
Query: 652 PPPPPP 635
PPPPPP
Sbjct: 907 PPPPPP 912
Score = 21.0 bits (42), Expect(2) = 6.0
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 651 PPPPPP 634
PPPPPP
Sbjct: 945 PPPPPP 950
Score = 21.0 bits (42), Expect(2) = 6.0
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -3
Query: 652 PPPPPP 635
PPPPPP
Sbjct: 946 PPPPPP 951
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 23.8 bits (49), Expect(2) = 4.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 613 PPPPPPP 593
PPPPPPP
Sbjct: 238 PPPPPPP 244
Score = 21.4 bits (43), Expect(2) = 4.8
Identities = 8/19 (42%), Positives = 8/19 (42%)
Frame = -3
Query: 652 PPPPPPXXXXKKXPPPPPP 596
P P PPPPPP
Sbjct: 179 PATSLPSDYNPPPPPPPPP 197
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 23.8 bits (49), Expect(2) = 6.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 613 PPPPPPP 593
PPPPPPP
Sbjct: 1096 PPPPPPP 1102
Score = 21.0 bits (42), Expect(2) = 6.2
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -3
Query: 652 PPPPPP 635
PPPPPP
Sbjct: 1095 PPPPPP 1100
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 23.8 bits (49), Expect(2) = 6.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 612 PPPPPPP 592
PPPPPPP
Sbjct: 307 PPPPPPP 313
Score = 23.8 bits (49), Expect(2) = 6.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 612 PPPPPPP 592
PPPPPPP
Sbjct: 308 PPPPPPP 314
Score = 21.0 bits (42), Expect(2) = 6.7
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 651 PPPPPP 634
PPPPPP
Sbjct: 306 PPPPPP 311
Score = 21.0 bits (42), Expect(2) = 6.7
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 651 PPPPPP 634
PPPPPP
Sbjct: 307 PPPPPP 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,603,118
Number of Sequences: 5004
Number of extensions: 22205
Number of successful extensions: 629
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 653435696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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