Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_F04
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.097
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.097

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 28.3 bits (60), Expect = 0.097
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +1

Query: 589  YPSRGLXXSPEAGSVPVSSMEVKTAWMASPG---DLTVH*TSSAYIXLPXYTPTXHLRHG 759
            Y  R +   P   SVP + + V+T      G   +L     SS+ I +    P   LRHG
Sbjct: 978  YTIRVIAEGPAGRSVPSAELIVRTEPQRPAGPPINLEARALSSSEILITWSPPLPELRHG 1037

Query: 760  DV 765
            D+
Sbjct: 1038 DI 1039


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.097
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +1

Query: 589  YPSRGLXXSPEAGSVPVSSMEVKTAWMASPG---DLTVH*TSSAYIXLPXYTPTXHLRHG 759
            Y  R +   P   SVP + + V+T      G   +L     SS+ I +    P   LRHG
Sbjct: 974  YTIRVIAEGPAGRSVPSAELIVRTEPQRPAGPPINLEARALSSSEILITWSPPLPELRHG 1033

Query: 760  DV 765
            D+
Sbjct: 1034 DI 1035


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,233
Number of Sequences: 438
Number of extensions: 4431
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)