Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_F03
         (1039 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   0.85 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.7  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect(2) = 0.85
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 522 PPPPPXXXXPPPPXXGGGGG 581
           PPPPP    PPPP     GG
Sbjct: 945 PPPPP----PPPPLVSAAGG 960



 Score = 21.0 bits (42), Expect(2) = 0.85
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 519 PPPPPP 536
           PPPPPP
Sbjct: 907 PPPPPP 912


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +3

Query: 522 PPPPPXXXXPPPPXXGGGGGXXXKKXXXPXPXP 620
           PPPPP    PPPP    GG           P P
Sbjct: 775 PPPPP----PPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 519 PPPPPPXXXXPPPPXXGGGGGXXXKKXXXPXP 614
           PPP P     PPPP   G  G        P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 519  PPPPPPXXXXPPPP 560
            P PPPP    PPPP
Sbjct: 1705 PTPPPPPMSVPPPP 1718


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = +3

Query: 519 PPPPPPXXXXPP--PPXXGGGGGXXXKKXXXP 608
           PPPPPP    PP  PP     G    +K   P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.153    0.548 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,346,265
Number of Sequences: 5004
Number of extensions: 15301
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 543234592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)