Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_F02
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +1

Query: 646 PXPPPXPXXXPNXXXPXNLXXXASLXPIPXHPPFXNXXPDXPTP 777
           P PPP P        P       S  P P  PP  N     P P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP 354



 Score = 26.2 bits (55), Expect = 5.3
 Identities = 23/80 (28%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
 Frame = +1

Query: 535 TXXPPGXXPXXXRVXATDPXGXPXAPXAQXXXXXXXPPXPPPXPXXXPNXXXPXNLXXXA 714
           T  PP   P      A  P   P AP +        PP PP  P   P    P  +    
Sbjct: 412 TSTPPVPTPPSLPPSAP-PSLPPSAPPSLPMGAPAAPPLPPSAPIAPP---LPAGMPAAP 467

Query: 715 SLXP-IPXHPPFXNXXPDXP 771
            L P  P  PP     P  P
Sbjct: 468 PLPPAAPAPPPAPAPAPAAP 487



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/39 (28%), Positives = 14/39 (35%)
 Frame = +3

Query: 357 PXPPSXQTXXXXRXTPXXQXPXXXPPXRXHPAXXXRPPP 473
           P PP           P  +     PP R  P+   +PPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/50 (28%), Positives = 14/50 (28%)
 Frame = +1

Query: 517 PXXPXXTXXPPGXXPXXXRVXATDPXGXPXAPXAQXXXXXXXPPXPPPXP 666
           P  P      P   P      A    G P  P          PP PPP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,612,772
Number of Sequences: 5004
Number of extensions: 16997
Number of successful extensions: 59
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)