Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_E24
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   0.28 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -2

Query: 403 PRNXPPPFFXXKKXWLGGAPPPPXXXPPPXXXXXXGPP 290
           P   P P        + G PPPP   PPP      GPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPP---PPPPGVAGAGPP 776



 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -1

Query: 470 PXPXXPPPGGGGX*XPXXXKXAPPXPXPP 384
           P P  PPPG  G   P      PP P PP
Sbjct: 761 PPPPPPPPGVAGAGPP------PPPPPPP 783



 Score = 25.0 bits (52), Expect(2) = 0.28
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 224 GXPXPPPPPG 195
           G P PPPPPG
Sbjct: 760 GPPPPPPPPG 769



 Score = 23.8 bits (49), Expect(2) = 0.28
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 230 IXGXPXPPPPP 198
           I G P PPPPP
Sbjct: 757 IMGGPPPPPPP 767


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 218 PXPPPPPGXKXP 183
           P PPPPPG + P
Sbjct: 10  PPPPPPPGFEPP 21


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
 Frame = -1

Query: 464  PXXPPPGGGGX*XPXXXKXAPPXPXPPFFFXX--KXLVGGGPXPPXXXPPP 318
            P  P P G     P     APP P P        K   G  P PP    PP
Sbjct: 1150 PPVPAPSGAPP-VPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,295,199
Number of Sequences: 5004
Number of extensions: 18887
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)