Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_E19
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0658 - 20366559-20367562,20367745-20367937                       30   2.5  
02_05_0040 + 25341418-25341810                                         29   4.3  
09_04_0329 + 16726501-16726750,16726843-16726930,16727280-167273...    28   9.9  
08_02_0955 + 22994266-22995630                                         28   9.9  

>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = +1

Query: 172 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQV 351
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL   V
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDLFWVV 310

Query: 352 QGG 360
             G
Sbjct: 311 HPG 313


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 117 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 215
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>09_04_0329 +
           16726501-16726750,16726843-16726930,16727280-16727333,
           16727590-16727739,16727884-16728015,16728279-16728423,
           16728514-16728552,16728638-16728712,16728935-16728994,
           16729120-16729184,16729519-16729609,16729806-16729820
          Length = 387

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 174 DWRSFLIGNARSFRQALLAYRQHNGTMCSS 85
           D RS + G+  S+R  LL  R+  G  CSS
Sbjct: 175 DARSIIRGSRPSYRNVLLGVRRELGVRCSS 204


>08_02_0955 + 22994266-22995630
          Length = 454

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 45  APRRDTLVAAATCSSSTWCHCAG-GRRAAPA*SCGHSRSEMSASRRRLSAP 194
           AP+R    A+ + S ++ C   G GRR +P+ S   SRS  S SR R   P
Sbjct: 2   APKRPA-AASGSASEASDCEAGGAGRRRSPSRSRSPSRS-ASPSRSRSKTP 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,871,920
Number of Sequences: 37544
Number of extensions: 335592
Number of successful extensions: 975
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)