Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_E10
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   140   3e-34
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   140   3e-34
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    28   1.7  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   3.0  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.9  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    27   3.9  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 63/94 (67%), Positives = 75/94 (79%)
 Frame = -1

Query: 391 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 212
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352

Query: 211 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 110
            ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 63/94 (67%), Positives = 75/94 (79%)
 Frame = -1

Query: 391 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 212
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352

Query: 211 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 110
            ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = -2

Query: 174 SVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRENKHLTMQKKK 7
           SV+ +SR+R   +HS   +RR+   ++  L   Q+   AA    RE +HLT+ +KK
Sbjct: 2   SVVNESRKRRRLIHSEKETRRLDLGEEDDLELFQKE--AAWRRSREYEHLTVLEKK 55


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 198 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 85
           NS+ PR   +    R+ L  L +  HS+R  F  KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 131 HGYTQEGSYSRRSCGYHNPS 72
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -2

Query: 732 GGXPGGKXXXGPXKIWGKPSPXXFXXPQK 646
           GG P G    G   IWGKP    F  P K
Sbjct: 328 GGDPSGTGRGGQ-SIWGKPFKDEFCNPLK 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,795
Number of Sequences: 5004
Number of extensions: 53297
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)