Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_E06
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.63 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.1  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 598 TPXXPXXXXPPXPPXKTPXPXNPPXETPXKTP 503
           +P  P    PP P  + P P  PP   P + P
Sbjct: 30  SPQAPQRGSPPNPS-QGPPPGGPPGAPPSQNP 60



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = -2

Query: 740 NPHQKXPRKTPXXTXXXNPPXGTPXXGKPXXXXPXNPN 627
           +PHQ    + P      NP  G P  G P      NP+
Sbjct: 26  SPHQSP--QAPQRGSPPNPSQGPPPGGPPGAPPSQNPS 61



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -2

Query: 596 PXXPPXXXPPXXPXKNPPXXXPPPGNPXXN 507
           P  P    PP  P + PP   PP   P  N
Sbjct: 31  PQAPQRGSPPN-PSQGPPPGGPPGAPPSQN 59



 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = -1

Query: 546 PXPXTPPXKPXXKXPXXPXXPPXPXNPXXXXP 451
           P P   P  P    P  P   P P  P    P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/47 (25%), Positives = 16/47 (34%)
 Frame = -2

Query: 671 PXXGKPXXXXPXNPNTRXPXKKQKXPXXPPXXXPPXXPXKNPPXXXP 531
           P  G P      + + + P +    P  P    PP  P   PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGS--PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
 Frame = -1

Query: 594 PQXPXXXPPXXPXKKPPXPX--TPPXKPXXKXPXXPXXPPXPXNP 466
           P      P   P + P  P   +PP       P  P   P   NP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 321 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 223
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 14/54 (25%), Positives = 18/54 (33%)
 Frame = -2

Query: 815 PPPXGXXXPXXXPXXKXPXKXPRXKNPHQKXPRKTPXXTXXXNPPXGTPXXGKP 654
           P P     P   P    P   P+ + PH +  R+ P      N P   P    P
Sbjct: 112 PHPRLRREPEAEPGNNRPVYIPQPRPPHPRL-RREPEAEPGNNRPVYIPQPRPP 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,383
Number of Sequences: 438
Number of extensions: 2098
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)