Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_E04
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   2.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.5  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 326 LRSLISNLSNTCDLTPLPEWSCERSAW 246
           +RS+   L    D+TP+ +W  +RS W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 20/79 (25%), Positives = 20/79 (25%)
 Frame = -1

Query: 686 GXXSGXXGGXPXXXXGGGXXXGXAGEXXXXXXXXXGRGXXGXXRGXGXXXGXGXXXXXXG 507
           G   G  GG P    G G   G  GE           G  G   G     G G      G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250

Query: 506 XXXXXXXRXXXXGXPPGRG 450
                       G P G G
Sbjct: 251 LGGFGGGPGGFGGGPGGHG 269



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 24/87 (27%), Positives = 24/87 (27%), Gaps = 1/87 (1%)
 Frame = -1

Query: 785 GXGXGASXXRAAGXXAXXAFGXXGXXXXGXXXXGXXSGXXGGXPXXXXGG-GXXXGXAGE 609
           G G G       G      FG  G    G    G   G   G P    GG G   G  G 
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLG- 252

Query: 608 XXXXXXXXXGRGXXGXXRGXGXXXGXG 528
                    G G  G   G G   G G
Sbjct: 253 -------GFGGGPGGFGGGPGGHGGPG 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,233,308
Number of Sequences: 5004
Number of extensions: 12340
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)