Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_E04
(830 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 39 0.004
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 1.0
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 30 1.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.4
U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific ... 28 7.1
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 39.1 bits (87), Expect = 0.004
Identities = 27/93 (29%), Positives = 27/93 (29%)
Frame = -1
Query: 830 RXGWXXSGXXVXXXXGXGXGASXXRAAGXXAXXAFGXXGXXXXGXXXXGXXSGXXGGXPX 651
R GW G G G G R G G G G G G GG
Sbjct: 45 RPGWGGGGPG-WGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGG 103
Query: 650 XXXGGGXXXGXAGEXXXXXXXXXGRGXXGXXRG 552
GGG G G GRG G RG
Sbjct: 104 RGGGGGGRGGGGGGGGGRGGGGGGRGGGGRGRG 136
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +1
Query: 523 CXPXPXXXPXPRXXPXXPRPXXXXXXXXXSPAXPXXXPPPXXXXGXPPXXPL 678
C P P P P P P P P PPP PP P+
Sbjct: 30 CPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPM 81
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/89 (23%), Positives = 25/89 (28%), Gaps = 1/89 (1%)
Frame = +1
Query: 523 CXPX-PXXXPXPRXXPXXPRPXXXXXXXXXSPAXPXXXPPPXXXXGXPPXXPLXXPXXXX 699
C P P P P P P P P PPP PP P P
Sbjct: 35 CQPRMPCAAPMPMPMPMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPP---PMPRP 91
Query: 700 PXXXXPXXPKAFXAWXPAALXXLAPXPXP 786
P + ++ P + P P P
Sbjct: 92 SCPCMMQRPSFYPSYVPQYYQPMMPQPMP 120
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/86 (25%), Positives = 22/86 (25%)
Frame = +1
Query: 529 PXPXXXPXPRXXPXXPRPXXXXXXXXXSPAXPXXXPPPXXXXGXPPXXPLXXPXXXXPXX 708
P P P P P P P PPP G PP P P
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPP-----PPPPPPGGCPPPPPPPPPGGFKGGP 784
Query: 709 XXPXXPKAFXAWXPAALXXLAPXPXP 786
P P F P L P P
Sbjct: 785 PPPPPPGMFAPMAPVIPDYLPPKKVP 810
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/74 (25%), Positives = 19/74 (25%)
Frame = +1
Query: 529 PXPXXXPXPRXXPXXPRPXXXXXXXXXSPAXPXXXPPPXXXXGXPPXXPLXXPXXXXPXX 708
P P P P P P P P P G PP P P P
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP---PPGGCPPP 771
Query: 709 XXPXXPKAFXAWXP 750
P P F P
Sbjct: 772 PPPPPPGGFKGGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/86 (25%), Positives = 22/86 (25%)
Frame = +1
Query: 529 PXPXXXPXPRXXPXXPRPXXXXXXXXXSPAXPXXXPPPXXXXGXPPXXPLXXPXXXXPXX 708
P P P P P P P PPP G PP P P
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPP-----PPPPPPGGCPPPPPPPPPGGFKGGP 784
Query: 709 XXPXXPKAFXAWXPAALXXLAPXPXP 786
P P F P L P P
Sbjct: 785 PPPPPPGMFAPMAPVIPDYLPPKKVP 810
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/74 (25%), Positives = 19/74 (25%)
Frame = +1
Query: 529 PXPXXXPXPRXXPXXPRPXXXXXXXXXSPAXPXXXPPPXXXXGXPPXXPLXXPXXXXPXX 708
P P P P P P P P P G PP P P P
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP---PPGGCPPP 771
Query: 709 XXPXXPKAFXAWXP 750
P P F P
Sbjct: 772 PPPPPPGGFKGGPP 785
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/86 (25%), Positives = 22/86 (25%)
Frame = +1
Query: 529 PXPXXXPXPRXXPXXPRPXXXXXXXXXSPAXPXXXPPPXXXXGXPPXXPLXXPXXXXPXX 708
P P P P P P P PPP G PP P P
Sbjct: 313 PPPGGLPPITGGPPPPPPPGGLPPISGGPP-----PPPPPPGGCPPPPPPPPPGGFKGGP 367
Query: 709 XXPXXPKAFXAWXPAALXXLAPXPXP 786
P P F P L P P
Sbjct: 368 PPPPPPGMFAPMAPVIPDYLPPKKVP 393
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/74 (25%), Positives = 19/74 (25%)
Frame = +1
Query: 529 PXPXXXPXPRXXPXXPRPXXXXXXXXXSPAXPXXXPPPXXXXGXPPXXPLXXPXXXXPXX 708
P P P P P P P P P G PP P P P
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP---PPGGCPPP 354
Query: 709 XXPXXPKAFXAWXP 750
P P F P
Sbjct: 355 PPPPPPGGFKGGPP 368
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +1
Query: 535 PXXXPXPRXXPXXPRPXXXXXXXXXSPAXPXXXPPPXXXXGXPPXXP 675
P P P P P P P P P P G PP P
Sbjct: 275 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 321
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/88 (25%), Positives = 25/88 (28%), Gaps = 4/88 (4%)
Frame = +1
Query: 535 PXXXPXPRXXPXXPRPXXXXXXXXXSPAXPXXXPPPXXXXGXPP----XXPLXXPXXXXP 702
P P P P P P P PPP PP P P P
Sbjct: 285 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 344
Query: 703 XXXXPXXPKAFXAWXPAALXXLAPXPXP 786
P P + P+A + P P P
Sbjct: 345 GGMPPPPPPRY----PSAGPGMYPPPPP 368
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +1
Query: 535 PXXXPXPRXXPXXPRPXXXXXXXXXSPAXPXXXPPPXXXXGXPPXXP 675
P P P P P P P P P P G PP P
Sbjct: 285 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 331
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/88 (25%), Positives = 25/88 (28%), Gaps = 4/88 (4%)
Frame = +1
Query: 535 PXXXPXPRXXPXXPRPXXXXXXXXXSPAXPXXXPPPXXXXGXPP----XXPLXXPXXXXP 702
P P P P P P P PPP PP P P P
Sbjct: 295 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 354
Query: 703 XXXXPXXPKAFXAWXPAALXXLAPXPXP 786
P P + P+A + P P P
Sbjct: 355 GGMPPPPPPRY----PSAGPGMYPPPPP 378
>U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific
family, class qprotein 4 protein.
Length = 373
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/78 (26%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Frame = -1
Query: 773 GASXXRAAGXXAXXAFGXXGXXXXGXXXXGXXSGXXG--GXPXXXXGGGXXXGXAGEXXX 600
G++ G A A+ G G G S G G P GGG G G
Sbjct: 286 GSAMGGGGGGGATSAYFGVGSGAMGGGGAGAQSAYFGVGGGPVGGGGGGAKSGGGGGGIP 345
Query: 599 XXXXXXGRGXXGXXRGXG 546
G G G G G
Sbjct: 346 GQSVYMGAGGGGGGGGGG 363
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,836,861
Number of Sequences: 27780
Number of extensions: 110455
Number of successful extensions: 454
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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