Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_E02
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   0.79 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.2  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   5.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.7  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 16/64 (25%), Positives = 21/64 (32%)
 Frame = +2

Query: 602  SXXSXLRPXPPXLXLSPXTPPXXAPPPTXPGPXXEXRXXVXXXIPPXRXAXPXXPXXXXX 781
            S  S L P PP   ++   P   +PPP   G            +PP +      P     
Sbjct: 902  SSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVA 961

Query: 782  XQXP 793
             Q P
Sbjct: 962  PQSP 965


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/69 (26%), Positives = 21/69 (30%)
 Frame = +2

Query: 491 PIVPXXHPGXRXXGXXXLGTSXXPAPXXGXXXXXPXVSXXSXLRPXPPXLXLSPXTPPXX 670
           P VP   P         L  S  P+   G     P         P P  +  +P  PP  
Sbjct: 415 PPVPTP-PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAA 473

Query: 671 APPPTXPGP 697
             PP  P P
Sbjct: 474 PAPPPAPAP 482


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 21/72 (29%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
 Frame = +2

Query: 479  PPXXPIVPXXHPGXRXXGXXXLGTSXXPAPXXGXXXXXPXVSXXSXLRPXP-PXLXLSPX 655
            P   P VP              G    P P  G     P V   S   P P P + + P 
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGV----PPVPPPSEAPPVPKPSVGVPPV 1210

Query: 656  TPPXXAPPPTXP 691
             PP  APP   P
Sbjct: 1211 PPPSTAPPVPTP 1222


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 320 LRSLMSNLSNTCDLTPLPEWSCEQSAW 240
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +2

Query: 623  PXPPXLXLSPX--TPPXXAPPPTXPGP 697
            P PP + + P    PP  A PP+ P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,667,736
Number of Sequences: 5004
Number of extensions: 19869
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)