Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_E01
(813 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 33 0.24
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 30 2.3
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 30 2.3
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 4.0
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 29 5.2
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 28 6.9
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 9.1
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 9.1
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 9.1
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/74 (28%), Positives = 25/74 (33%)
Frame = +1
Query: 556 PPTPXXSGPXXXXXRXAXPXXXGRARTXSXXFAPRGPPXXXSPPGTSSXPXXGXAXGGXX 735
P GP + P G + T S P GPP PPG P A G
Sbjct: 197 PARQGAPGPPGPAGQPGQPGEPGHSDTSSTA-GPPGPPGPGGPPGQDGHPGDAGAPGAPG 255
Query: 736 XLLRGRPXXRSXPG 777
++ G P PG
Sbjct: 256 QVVAG-PGSVGPPG 268
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/81 (24%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Frame = +1
Query: 517 PXXXSPXXXXXQDPP-TPXXSGPXXXXXRXAXPXXXGRARTXSXXFAPRGPPXXXSPPGT 693
P P Q PP P GP P G+ P+GPP PG
Sbjct: 139 PITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEP-GPKGPPGPPGAPGA 197
Query: 694 SSXPXXGXAXGGXXXLLRGRP 756
P L+ G P
Sbjct: 198 PGTPGEPGVPAQSEPLIPGEP 218
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/81 (24%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Frame = +1
Query: 517 PXXXSPXXXXXQDPP-TPXXSGPXXXXXRXAXPXXXGRARTXSXXFAPRGPPXXXSPPGT 693
P P Q PP P GP P G+ P+GPP PG
Sbjct: 139 PITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEP-GPKGPPGPPGAPGA 197
Query: 694 SSXPXXGXAXGGXXXLLRGRP 756
P L+ G P
Sbjct: 198 PGTPGEPGVPAQSEPLIPGEP 218
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/103 (23%), Positives = 28/103 (27%)
Frame = +1
Query: 469 PXXPXIXPGHXRRXXXPXXXSPXXXXXQDPPTPXXSGPXXXXXRXAXPXXXGRARTXSXX 648
P P P P P PP P + P A G A
Sbjct: 131 PGNPGKPPVQPCEPITPPPCKPCPDGPAGPPGPPGA-PGDAGTNGAPGAPGGDAPPGEA- 188
Query: 649 FAPRGPPXXXSPPGTSSXPXXGXAXGGXXXLLRGRPXXRSXPG 777
P+GPP PG P L+ G P + PG
Sbjct: 189 -GPKGPPGPPGSPGAPGEPGRPGDDAPSEPLIPGEPGPQGPPG 230
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/76 (27%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Frame = +1
Query: 556 PPTPXXSGPXXXXXRXAXPXXXGRARTXSXXFAPRGPPXXXSPPGTSSXPXXGXAXG--G 729
P P GP P G + P GPP PPG P A G G
Sbjct: 191 PGPPGKQGPKGPNGEPGAPGTPG----GNALPGPPGPPGPQGPPGADGLPGNPGAPGVPG 246
Query: 730 XXXLLRGRPXXRSXPG 777
+ G P PG
Sbjct: 247 QVIEVPGTPGPAGPPG 262
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Frame = +1
Query: 556 PPTPXXSGPXXXXXRXAXPXXXGR----ARTXSXXFAPRGPPXXXSPPGTSSXPXXGXAX 723
P P +G + P GR A+ S P GP PPG + P G
Sbjct: 220 PGAPGPAGDAGSPGQPGAPGQPGRPGKNAQGGSSRPGPPGPAGPPGPPGNNGAPGGGYGV 279
Query: 724 GGXXXL-LRGRPXXRSXPG 777
G GRP PG
Sbjct: 280 GPPGPPGPSGRPGAPGQPG 298
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Frame = +1
Query: 655 PRGPPXXXSPPGTSSXPXXGXAXG-GXXXLLRGRPXXRSXPG 777
P+GPP PPG P G G P R PG
Sbjct: 151 PQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPG 192
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Frame = +1
Query: 655 PRGPPXXXSPPGTSSXPXXGXAXG-GXXXLLRGRPXXRSXPG 777
P+GPP PPG P G G P R PG
Sbjct: 146 PQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPG 187
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Frame = +1
Query: 655 PRGPPXXXSPPGTSSXPXXGXAXG-GXXXLLRGRPXXRSXPG 777
P+GPP PPG P G G P R PG
Sbjct: 146 PQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPG 187
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,320,496
Number of Sequences: 27780
Number of extensions: 141907
Number of successful extensions: 544
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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