Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_D24
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    28   5.4  

>Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical
           protein C29F7.5 protein.
          Length = 722

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 332 PLGPPKRAPGVPKNPREKKKXXGXGKKK 415
           P+G   +   VPKNP+++KK    G KK
Sbjct: 155 PIGKKVQKEKVPKNPKKEKKDFTGGDKK 182


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = -1

Query: 553 PXXXPPXXGXPPXXXXKGXPXGGXPXGXXKKKKXXPXGKEXXP 425
           P   PP  G P      G P  G P G     +  P G    P
Sbjct: 172 PSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGP 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,897,659
Number of Sequences: 27780
Number of extensions: 113083
Number of successful extensions: 236
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)