Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_D22
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 161 6e-40
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 161 6e-40
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.1
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019... 29 3.1
06_03_0543 + 21967787-21970261 29 5.4
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.1
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 28 9.4
02_02_0210 + 7873962-7874753 28 9.4
02_02_0209 + 7866348-7867139 28 9.4
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 161 bits (391), Expect = 6e-40
Identities = 76/139 (54%), Positives = 95/139 (68%), Gaps = 1/139 (0%)
Frame = -1
Query: 768 ETPXXVFVISSRPFGQRAVXKFAG-TPVYAYCGTFHTRCFXNQIQXAFREXRFLIVLDPA 592
E P + V S+RP+GQRAV KFA T +A G F NQ+Q +F E R LI+ DP
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPR 132
Query: 591 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 412
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 133 TDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGT 192
Query: 411 LPRDQRWDVVVDLFFYRDP 355
+ +WDV+VDLFFYRDP
Sbjct: 193 ILPGHKWDVMVDLFFYRDP 211
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 161 bits (391), Expect = 6e-40
Identities = 76/139 (54%), Positives = 96/139 (69%), Gaps = 1/139 (0%)
Frame = -1
Query: 768 ETPXXVFVISSRPFGQRAVXKFAG-TPVYAYCGTFHTRCFXNQIQXAFREXRFLIVLDPA 592
E P + V S+RP+GQRAV KFA T +A G F NQ+Q +F E R LI+ DP
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPR 132
Query: 591 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 412
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG
Sbjct: 133 TDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGT 192
Query: 411 LPRDQRWDVVVDLFFYRDP 355
+ +WDV+VDLFFYRDP
Sbjct: 193 ILPGHKWDVMVDLFFYRDP 211
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 207 TRCSSCFWSTPCSRRMVCPGAR*VEHN 127
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 207 TRCSSCFWSTPCSRRMVCPGAR 142
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>02_02_0574 -
11701359-11701460,11701469-11701570,11701725-11701922,
11702090-11704052,11705312-11706126
Length = 1059
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = -1
Query: 687 YAYCGTFHTRCFXNQIQXAFREXRFLIVLDPAQDHQ--PITEASYVNIPVIALCNTDSPL 514
YA+ T+ + N+I+ +E R+LIV+D + E + + + T S
Sbjct: 249 YAWTETWCAQEIINKIRDEIKEKRYLIVIDDIWEKSAWECIECALIENDRGSRIITTS-- 306
Query: 513 RFVDIAIPCNTKSSHSI 463
R +D A PC+++ H++
Sbjct: 307 RVLDAATPCSSEVDHTV 323
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 459 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 370
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 207 TRCSSCFWSTPCSRRMVCPGAR*VEHN 127
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +3
Query: 354 RGHGRRTNQPQHPSAGHGEAHHEASTLH 437
R HG + H GHG +HH +H
Sbjct: 68 RAHGDHHHGHHHHHHGHGHSHHHGPEVH 95
>02_02_0210 + 7873962-7874753
Length = 263
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -1
Query: 228 RYRPACCTRCSSCFWSTP--CSRRMVCPGA 145
R++PA R W+TP C RR C GA
Sbjct: 31 RWQPAAAARRKGTAWNTPLRCWRRWWCSGA 60
>02_02_0209 + 7866348-7867139
Length = 263
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -1
Query: 228 RYRPACCTRCSSCFWSTP--CSRRMVCPGA 145
R++PA R W+TP C RR C GA
Sbjct: 31 RWQPAAAARRKGTAWNTPLRCWRRWWCSGA 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,219,277
Number of Sequences: 37544
Number of extensions: 374136
Number of successful extensions: 981
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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