Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_D20
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.36 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   0.68 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 396 PPPPPPXXGGXPXKKXPPXXKXG 464
           PPPPPP  G  P  + PP    G
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
 Frame = +3

Query: 372 PPXXXXXXPPPPPPXXG----GXPXKKXPPXXKXGG 467
           PP      PPPPPP  G    G P    PP     G
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 26.2 bits (55), Expect(2) = 0.68
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 399 PPPPPXXGGXPXKKXPPXXKXGG 467
           PPP P  GG P    PP     G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAG 774



 Score = 21.0 bits (42), Expect(2) = 0.68
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 396 PPPPPP 413
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
 Frame = +3

Query: 372  PPXXXXXXPPPP--PPXXGGXPXKKXPP 449
            PP      PPPP  PP   G P    PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,134,857
Number of Sequences: 5004
Number of extensions: 13469
Number of successful extensions: 176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)