Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_D19
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    26   6.3  

>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 341 GPPXRCRWCP-GIPRWTRTXLPGRDAIHRRPVALI 442
           GPP + RW P GI +  R+ + GR+ I +  +  I
Sbjct: 58  GPPGKIRWFPLGIRKEVRSNVSGREIIIKMIITFI 92


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = +2

Query: 131 FRTHPLNDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHP 262
           FR  P+ D+P L            P  VGG  R    PDG  HP
Sbjct: 294 FRNCPMADAPMLQVLEKAAQTVFVPLTVGGGIRDVSDPDGTFHP 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,783
Number of Sequences: 5004
Number of extensions: 37870
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)