Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_D19
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0281 + 26912419-26913099 33 0.17
02_02_0063 + 6481568-6481570,6481922-6482470 33 0.17
07_03_0369 - 17356806-17356934,17357145-17357278,17357989-173582... 31 0.93
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 31 0.93
11_03_0140 - 10637818-10638059,10638189-10638461,10639963-106404... 30 1.6
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 30 2.2
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669... 30 2.2
11_07_0002 - 27171791-27172222 29 2.8
09_02_0279 + 6702517-6702948 29 2.8
11_06_0610 - 25449085-25453284 29 3.8
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 3.8
02_01_0302 - 2021221-2023305 29 5.0
10_07_0062 - 12499872-12501350 28 6.6
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466... 28 6.6
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79... 28 8.7
03_06_0199 + 32310272-32311432 28 8.7
>05_06_0281 + 26912419-26913099
Length = 226
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 239 QPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPXRCRWCPGIPRWTRTXLPGRD 412
+P G P + P P+ ++ +R+P GP W PG+P T+T L G D
Sbjct: 82 RPVGPTPPPPSHPVVPTPTQLAADDDGGLLRRPGGPTPPSPWHPGVP--TQTQLAGGD 137
>02_02_0063 + 6481568-6481570,6481922-6482470
Length = 183
Score = 33.5 bits (73), Expect = 0.17
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = -1
Query: 456 APP*VIRATGRRCIASRPGRXVLVQRGIPGHQRHRXGGPTG 334
A P V ATGRR A+RPGR V + + G +R GP G
Sbjct: 123 AQPWVTVATGRRDAATRPGRLVAMAATV-GSRREERRGPAG 162
>07_03_0369 -
17356806-17356934,17357145-17357278,17357989-17358247,
17358322-17358410,17358644-17358794,17358889-17359032,
17359358-17359477,17359595-17359769,17359842-17360215
Length = 524
Score = 31.1 bits (67), Expect = 0.93
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +2
Query: 143 PLNDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAA---HPKDAQPTEPSRRIEGSET 313
P + SP L PT+ L P G LPRS A HP+DA P+ PS R +G
Sbjct: 28 PEDGSPFLRLPTASDL----PVPAGQLPRSAAVGLIRALNLHPRDASPS-PSSRGDGDVP 82
Query: 314 SAVSVRQPV 340
+ V +P+
Sbjct: 83 AGTLVERPI 91
>07_03_0111 +
13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 31.1 bits (67), Expect = 0.93
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = +1
Query: 139 PPTKRLPCTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEA 294
PP P D + P EP + +A T RR GSP PA A +A
Sbjct: 123 PPPPPPPPPSPKDAAADPAKEPSGSKAGSAAATGGRRTGSPPPSPAPVAKDA 174
>11_03_0140 -
10637818-10638059,10638189-10638461,10639963-10640473,
10640556-10640768,10642717-10642784,10642893-10642958,
10644862-10644961
Length = 490
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = +2
Query: 137 THPLNDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETS 316
T P+N +P L +NP T G A+P D+ +P R ET
Sbjct: 94 TEPVNTTPTTLPTQGGSSAAENPSTSSNQSTGTSGASGFANPTDS-VAQPPRSTSRDETP 152
Query: 317 AVSVRQ 334
++S ++
Sbjct: 153 SISEKE 158
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 29.9 bits (64), Expect = 2.2
Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Frame = +2
Query: 146 LNDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVS 325
+ND A H D + G+ PD QP A P+D QP PS + TS
Sbjct: 179 INDLDAGRH---DAVHGEQPDGERDADEHRGQPHQRAAPRDVQPPSPSS--SPATTSPAH 233
Query: 326 VRQPVGPPXRCRWCPGIPRW-TRTXLPGRDAIHRRPV 433
R+ G P P W + LP R R P+
Sbjct: 234 PRRAHGQVLLGSH-PRGPHWRVQGHLPQRQGPRRVPI 269
>04_03_0849 +
20265511-20265984,20266452-20266617,20266694-20266905,
20267154-20267647,20267732-20267780,20267922-20268251
Length = 574
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 320 VSVRQPVGPPXRCRWCPGIPRWTR 391
+ + + V PP R WCP RW R
Sbjct: 1 MEIARVVAPPLRLAWCPASRRWGR 24
>11_07_0002 - 27171791-27172222
Length = 143
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = -3
Query: 430 RSTVYRVPTRQXGSGPAGYSGTPAAPXGRPDG----LPYRDGRRF 308
RS+ + + GS PAG G+PA G P G P GR F
Sbjct: 55 RSSAASTSSARAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
>09_02_0279 + 6702517-6702948
Length = 143
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = -3
Query: 430 RSTVYRVPTRQXGSGPAGYSGTPAAPXGRPDG----LPYRDGRRF 308
RS+ + + GS PAG G+PA G P G P GR F
Sbjct: 55 RSSAASTSSARAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Frame = +2
Query: 176 TSDPLRGQNPDEVGGLPRSTLQ-PDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPX 352
T P + P+E P S + P AHP P+E S E+S + + PP
Sbjct: 767 TPSPPKSSPPEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPS 826
Query: 353 RCRWCPGIP 379
P P
Sbjct: 827 GHEGTPPSP 835
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 177 RPIPSEVRTRMR*GGYRGQHYNQTARLTPR 266
R PSE+R+R R G RG+ Y+Q +PR
Sbjct: 121 RKKPSEMRSRDRISGSRGRSYDQRYSRSPR 150
>02_01_0302 - 2021221-2023305
Length = 694
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/56 (26%), Positives = 20/56 (35%)
Frame = +2
Query: 122 PRXFRTHPLNDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPS 289
P+ THP SP + + P PD P + P + P P PS
Sbjct: 534 PQSTPTHPSYPSPPVTYTPPPPTSADRPDVRFAPPPGSYGPIPSTPPSSGSPPSPS 589
>10_07_0062 - 12499872-12501350
Length = 492
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -1
Query: 411 SRPGRXVLVQRGIPGHQRHRXGGPTGCRTETADVSEPSIRLEGSVGWASL 262
+R R VLV+ + + RHR GG +TA S +R GW SL
Sbjct: 328 ARGDRSVLVRGNLHWYLRHRDGGCKIMVFDTASESFQWMRHPAIPGWVSL 377
>01_06_1141 +
34845834-34845931,34846110-34846198,34846535-34846686,
34847473-34847583,34847702-34847818,34847989-34848156,
34848563-34848703
Length = 291
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 140 HPLNDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAH 259
HPL P +P G P++ G PR T+ +GAAH
Sbjct: 91 HPLPQVPNFCGNGFNPWTGTLPEK-NGFPRGTMGWEGAAH 129
>09_01_0043 +
790859-790873,791410-791603,792521-792605,792719-793075
Length = 216
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -3
Query: 394 GSGPAGYSGTPAAPXGRPDGLPYRDG 317
GSG AG G+ A GR DG RDG
Sbjct: 120 GSGKAGCVGSRADQDGRLDGREVRDG 145
>03_06_0199 + 32310272-32311432
Length = 386
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 83 SHIPRAPLLRGDLVGGSALYPKKKKK 6
S PR PLLRG + GGSA + + +K
Sbjct: 203 SREPRVPLLRGGIRGGSAAHLQDGQK 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,230,648
Number of Sequences: 37544
Number of extensions: 389362
Number of successful extensions: 1293
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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