Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_D19
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 1.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 1.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 1.9
AC006610-7|AAK85451.1| 392|Caenorhabditis elegans Hypothetical ... 30 1.9
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 3.4
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 3.4
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 29 3.4
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 29 4.5
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 29 4.5
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 29 4.5
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 4.5
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 4.5
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 4.5
U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical pr... 28 7.8
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 28 7.8
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +2
Query: 143 PLND-SPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTE-PSRRIEGSETS 316
P N+ SP + P+ +P P P QP G P P+E P +E SE
Sbjct: 84 PSNEPSPGTVAPSDEPSPSGPPSPGPVNPSEDPQPSGPPSPGPVDPSEDPQPSVEPSED- 142
Query: 317 AVSVRQPVGPP 349
QP GPP
Sbjct: 143 ----HQPSGPP 149
>Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical
protein ZK512.8 protein.
Length = 171
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +2
Query: 155 SPALLHPT--SDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSV 328
SP H + S+P + DE+ L R + D HP + + +P + E S TSA S
Sbjct: 43 SPVSTHLSLASNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVTSAHSN 102
Query: 329 RQ-PVGPPXRCRWCPGIP 379
PV P G+P
Sbjct: 103 SSLPVRSPAIMTLMGGVP 120
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 391 SGPAGYSGTPAAPXGRPDGLPYRDG 317
+GPAG G P AP PDG P +DG
Sbjct: 144 AGPAGPDGAPGAPG--PDGQPGQDG 166
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 1.9
Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 5/135 (3%)
Frame = +1
Query: 148 KRLPCTLTPDVRSPPRSE-PG*GRGATAVNTTTRR---RGSPQGRPADGAFEANRRL*NV 315
+R P T +P SPP P G G ++ ++ R RG P+G P G +++ +
Sbjct: 341 ERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEES-SE 399
Query: 316 GRLGXXXXXXXXXVPLVSRNTPLDQNXPAGS-GRDTPSTGRSNHSRRRAXXLVXXXTXSP 492
R +P P GS +P TG + +R+A T SP
Sbjct: 400 SREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPE--DRPTGSP 457
Query: 493 PQVXPXTFTGGRXXP 537
P P T R P
Sbjct: 458 PTGSPPTGRPHRGGP 472
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 1.9
Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 5/135 (3%)
Frame = +1
Query: 148 KRLPCTLTPDVRSPPRSE-PG*GRGATAVNTTTRR---RGSPQGRPADGAFEANRRL*NV 315
+R P T +P SPP P G G ++ ++ R RG P+G P G +++ +
Sbjct: 362 ERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEES-SE 420
Query: 316 GRLGXXXXXXXXXVPLVSRNTPLDQNXPAGS-GRDTPSTGRSNHSRRRAXXLVXXXTXSP 492
R +P P GS +P TG + +R+A T SP
Sbjct: 421 SREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPE--DRPTGSP 478
Query: 493 PQVXPXTFTGGRXXP 537
P P T R P
Sbjct: 479 PTGSPPTGRPHRGGP 493
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 1.9
Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 5/135 (3%)
Frame = +1
Query: 148 KRLPCTLTPDVRSPPRSE-PG*GRGATAVNTTTRR---RGSPQGRPADGAFEANRRL*NV 315
+R P T +P SPP P G G ++ ++ R RG P+G P G +++ +
Sbjct: 347 ERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEES-SE 405
Query: 316 GRLGXXXXXXXXXVPLVSRNTPLDQNXPAGS-GRDTPSTGRSNHSRRRAXXLVXXXTXSP 492
R +P P GS +P TG + +R+A T SP
Sbjct: 406 SREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPE--DRPTGSP 463
Query: 493 PQVXPXTFTGGRXXP 537
P P T R P
Sbjct: 464 PTGSPPTGRPHRGGP 478
>AC006610-7|AAK85451.1| 392|Caenorhabditis elegans Hypothetical
protein C30F12.5 protein.
Length = 392
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 152 DSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHP 262
D P + HP PL +P G +PR+ L P+GA P
Sbjct: 319 DEPRIGHPLYSPLPPIDPT-YGTIPRARLAPNGAPPP 354
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 391 SGPAGYSGTPAAP--XGRPDGLPYRDGRR 311
+GPAG +G P AP G+P G P +DG+R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGQR 198
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 412 VPTRQXGSGPAGYSGTPAAPXGR----PDGLPYRDG 317
VP +Q SG GY G P P + DG P RDG
Sbjct: 1129 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1164
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 412 VPTRQXGSGPAGYSGTPAAPXGR----PDGLPYRDG 317
VP +Q SG GY G P P + DG P RDG
Sbjct: 1386 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1421
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 412 VPTRQXGSGPAGYSGTPAAPXGR----PDGLPYRDG 317
VP +Q SG GY G P P + DG P RDG
Sbjct: 1385 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1420
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -3
Query: 391 SGPAGYSGTPAAP--XGRPDGLPYRDGRR 311
+GPAG +G P AP G+P G P +DG R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGHR 198
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 391 SGPAGYSGTPAAPXGR-PDGLPYRDGRRFR 305
+GP G +GTP P + DG P ++GRR R
Sbjct: 173 AGPQGDAGTPGQPGQQGQDGRPGQNGRRGR 202
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -3
Query: 427 STVYRVPTRQXGSGPAGYSGTPAAPXGRPDGLPYRDG 317
ST +P GP G G P AP P G P +DG
Sbjct: 128 STSECIPCPAGAPGPQGPDGAPGAPG--PSGQPGQDG 162
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 388 GPAGYSGTPAAPXG-RPDGLPYRDG 317
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 388 GPAGYSGTPAAPXG-RPDGLPYRDG 317
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -3
Query: 388 GPAGYSGTPAAPXGRP--DGLPYRDGRR 311
GPAG +G P AP G P DG P ++G+R
Sbjct: 173 GPAGDAGAPGAP-GAPGNDGQPGQNGQR 199
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -3
Query: 388 GPAGYSGTPAAPXGRP-DGLPYRDGRRFRAFD 296
GP GY G P P R DG P +G A+D
Sbjct: 144 GPTGYPGAPGEPGSRGLDGRPGANGVTLIAYD 175
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 388 GPAGYSGTPAAPXGRP--DGLPYRDGRRFRAFDSP 290
GPAG +G+P P G P G P R G+R R P
Sbjct: 173 GPAGDAGSPGQP-GHPGSPGNPGRGGQRSRGLPGP 206
>U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical
protein F11G11.5 protein.
Length = 223
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Frame = +2
Query: 173 PTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRR------------IEGSETS 316
P PL P + G + S+ QP + P+ QPT PSR I+ S
Sbjct: 7 PVKQPLPDSPPTDEG-MSSSSAQPSAPSAPEQ-QPTSPSRPPPPAGFVYPSTDIQNSSEV 64
Query: 317 AVSVRQPVGPP 349
VS P GPP
Sbjct: 65 HVSAPVPAGPP 75
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 27.9 bits (59), Expect = 7.8
Identities = 30/105 (28%), Positives = 37/105 (35%)
Frame = -1
Query: 513 GXRGDLRGXXRXXRYQXXSAPP*VIRATGRRCIASRPGRXVLVQRGIPGHQRHRXGGPTG 334
G G G R Q +A IRA G I R RG P H+ G G
Sbjct: 826 GANGTTSGTSRGFT-QRPTAAGWTIRANG---ITRGQTRVPGTTRG-PTHRPTTAGWTNG 880
Query: 333 CRTETADVSEPSIRLEGSVGWASLG*AAPSGCSVDRGSPPTSSGF 199
T D S R + GW + SG S PT++G+
Sbjct: 881 ANGTTRDTSRGFTRRPTTAGWTNGANGTTSGTSRGFTQRPTAAGW 925
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,873,083
Number of Sequences: 27780
Number of extensions: 273245
Number of successful extensions: 1130
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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