Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_D18
         (1068 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0080 + 587674-588510                                             25   3.5  
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703...    30   3.6  

>07_01_0080 + 587674-588510
          Length = 278

 Score = 25.0 bits (52), Expect(2) = 3.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +1

Query: 673 PQKKXGGGXFFXXPXXXXXXXXXXKXXXPPPPPP 774
           P +  G G F   P              PPPPPP
Sbjct: 79  PPRLGGDGMFRRPPPPPPPPPSSGSPPPPPPPPP 112



 Score = 23.4 bits (48), Expect(2) = 3.5
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 757 PPPPPPFXF*KXKKKGVFXSXGLGGP 834
           PPPPPP  F +        S G G P
Sbjct: 115 PPPPPPPLFTRRSHAPQDNSSGTGVP 140


>01_01_0892 +
           7037384-7037795,7038447-7038962,7039507-7039593,
           7039698-7039768,7040148-7040224,7040380-7040527,
           7040973-7041134,7041374-7041694
          Length = 597

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 757 PPPPPPFXF*KXKKKGVFXSXGLGGPPXXP 846
           PPPPPP  F      GV+ +    GPP  P
Sbjct: 128 PPPPPPPPFKGDHYGGVYQNWQQNGPPPPP 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,952,805
Number of Sequences: 37544
Number of extensions: 301223
Number of successful extensions: 2599
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2497
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3176197312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)