Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_D14
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.18 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    31   0.24 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    29   0.56 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   3.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.2  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   6.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +3

Query: 366 APPXX-IPPXGXPAPPXAXPTPXXRXPPRXXGLXPALSPXXXXXTPPTRXXLGXXWPXRP 542
           APP   IPP   P+P  A P P  + PP    L P   P     +PP+   L    P  P
Sbjct: 143 APPRPSIPP---PSPASAPPIPS-KAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198



 Score = 30.3 bits (65), Expect = 0.32
 Identities = 14/44 (31%), Positives = 16/44 (36%)
 Frame = +3

Query: 372 PXXIPPXGXPAPPXAXPTPXXRXPPRXXGLXPALSPXXXXXTPP 503
           P   PP     PP A P    + PP    L  A+ P      PP
Sbjct: 161 PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 24/59 (40%), Positives = 25/59 (42%)
 Frame = -2

Query: 538 RXGXXXPNXXRVGGVXXXXXGERAGXRPXXRGGXRXXGVGXAXGGAGXPXGGXXXGGAR 362
           R G    N  R GG      G R G R   RGG    G G A GG G   GG   GGA+
Sbjct: 15  RGGRGGFNGGR-GGFGGGRGGARGGGRGGARGG--RGGRGGARGGRGGSSGG--RGGAK 68


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 19/61 (31%), Positives = 21/61 (34%)
 Frame = -2

Query: 544 PGRXGXXXPNXXRVGGVXXXXXGERAGXRPXXRGGXRXXGVGXAXGGAGXPXGGXXXGGA 365
           P   G   P   R G       G   G R   RGG      G   GG+    GG   GG+
Sbjct: 119 PKTVGPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGS 178

Query: 364 R 362
           R
Sbjct: 179 R 179



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = -2

Query: 502 GGVXXXXXGERAGXRPXXRGGXRXXGVGXAXGGAGXPXGGXXXGGAR 362
           GG      G R G     RGG      G   GG+     G   GG+R
Sbjct: 141 GGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSR 187


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 381 IPPXGXPAPPXAXPTPXXRXPPRXXGLXPALSP 479
           I P   PAPP   PTP  +  P    +  ++SP
Sbjct: 723 IKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISP 755


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
 Frame = +3

Query: 366 APPXXIPPXGXPA-PPXAXPTPXXRXP-PRXXGLXPALSPXXXXXTPPT 506
           APP  IP    PA PP    +     P P    L P+  P      PP+
Sbjct: 390 APPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPS 438


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 320 LRSLISNLSNTCDLTPLPEWSCEQSAW 240
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,337,663
Number of Sequences: 5004
Number of extensions: 13320
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)