Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_D12
(868 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 0.12
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 31 0.21
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.65
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.65
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.65
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 23 1.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.6
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.8 bits (49), Expect(3) = 0.12
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 735 PPPPPPP 715
PPPPPPP
Sbjct: 311 PPPPPPP 317
Score = 23.8 bits (49), Expect(2) = 0.76
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 732 PPPPPPP 712
PPPPPPP
Sbjct: 311 PPPPPPP 317
Score = 23.8 bits (49), Expect(3) = 0.12
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 732 PPPPPPP 712
PPPPPPP
Sbjct: 337 PPPPPPP 343
Score = 23.8 bits (49), Expect(2) = 0.76
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 729 PPPPPPP 709
PPPPPPP
Sbjct: 337 PPPPPPP 343
Score = 21.0 bits (42), Expect(3) = 0.12
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2
Query: 726 PPPPPP 709
PPPPPP
Sbjct: 361 PPPPPP 366
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 31.1 bits (67), Expect = 0.21
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2
Query: 735 PPPPPPPPPXXXFF 694
PPPPPPPPP F+
Sbjct: 306 PPPPPPPPPSNDFW 319
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 732 PPPPPPPPXXXFFF 691
PPPPPPPP F+
Sbjct: 306 PPPPPPPPPSNDFW 319
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.65
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 735 PPPPPPPPP 709
PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 26.2 bits (55), Expect = 6.0
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 735 PPPPPPPPP 709
P PPPPPPP
Sbjct: 236 PAPPPPPPP 244
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.65
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 735 PPPPPPPPP 709
PPPPPPPPP
Sbjct: 775 PPPPPPPPP 783
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 735 PPPPPPPP 712
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect(2) = 0.70
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 732 PPPPPPPP 709
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 21.0 bits (42), Expect(2) = 0.70
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2
Query: 735 PPPPPP 718
PPPPPP
Sbjct: 732 PPPPPP 737
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.5 bits (63), Expect = 0.65
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 735 PPPPPPPPP 709
PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953
Score = 23.4 bits (48), Expect(2) = 1.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 735 PPPPPPPP 712
P PPPPPP
Sbjct: 905 PTPPPPPP 912
Score = 22.6 bits (46), Expect(2) = 1.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 732 PPPPPPPP 709
PPPPPP P
Sbjct: 907 PPPPPPLP 914
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 23.4 bits (48), Expect(2) = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 735 PPPPPPPP 712
P PPPPPP
Sbjct: 3 PAPPPPPP 10
Score = 23.4 bits (48), Expect(2) = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 732 PPPPPPPP 709
PPPPPP P
Sbjct: 5 PPPPPPAP 12
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 735 PPPPPPPP 712
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 732 PPPPPPPP 709
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 735 PPPPPPPP 712
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 732 PPPPPPPP 709
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 735 PPPPPPPP 712
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 732 PPPPPPPP 709
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,153,976
Number of Sequences: 5004
Number of extensions: 11720
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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