Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_D11
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.17 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.38 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.67 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.1  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -3

Query: 601 PXXXPPPPPXGGXXGXXXFXXXXXPPPPPPXXFXXK 494
           P   PPPPP  G      F     PPPPPP  +  K
Sbjct: 6   PGNPPPPPPPPG------FEPPSQPPPPPPPGYVKK 35


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -1

Query: 588 PPPPPXGGXGGXXXXXXXAPPPPPP 514
           PPPPP  G  G        PPPPPP
Sbjct: 762 PPPPPPPGVAG---AGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 0.89
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = -3

Query: 589 PPPPPXGGXXGXXXFXXXXXPPPPPPXXFXXKXGG 485
           PPPPP  G  G         PPPPPP       GG
Sbjct: 762 PPPPPPPGVAGAG-------PPPPPPPPPAVSAGG 789


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
 Frame = -1

Query: 588 PPPPPXGGXGGXXXXXXX---APPPPPP 514
           PPPPP     G          APPPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 29.1 bits (62), Expect = 0.89
 Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
 Frame = -3

Query: 589 PPPPPXGGXXGXXXFXXXXXPPPPPPXXFXXKXGGG--GGGGGXXXLXPPP 443
           PP PP                PPPPP       G    G G     L PPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
 Frame = -3

Query: 589 PPPPPXGGXXGXXXFXXXXXPPPPPP--XXFXXKXGGGGGGGGXXXLXPPP 443
           P PPP               PPPPPP       K   G G        PPP
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = +2

Query: 446 GGXQXXGXXXXXXXXXFXXKXXXGGGGGGAXXXKXXXPPXPPXGGGGGXXXG 601
           GG    G         F  +   GGG GG        PP P   GG G   G
Sbjct: 164 GGLALGGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGG 215


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = -3

Query: 586 PPPPXGGXXGXXXFXXXXXPPPPPPXXFXXKXGGGGGGGG 467
           PPPP G   G         P   P   F  + GG  GG G
Sbjct: 99  PPPPRGPLFGPRIGGGHHGPLHGPHGGFGGRGGGRMGGRG 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.148    0.498 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,361,603
Number of Sequences: 5004
Number of extensions: 17426
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)