Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_D09
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.068
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.63 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.068
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +3

Query: 465 PPPXXXXXXPPPPPPXXXXPPPPXGGGG 548
           PPP      PPPPPP    PPP    GG
Sbjct: 766 PPPGVAGAGPPPPPP----PPPAVSAGG 789



 Score = 29.9 bits (64), Expect = 0.48
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
 Frame = +3

Query: 465 PPPXXXXXXPPPPPP----XXXXPPPP 533
           PPP      PPPPPP        PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 29.1 bits (62), Expect = 0.84
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 466 PPPXXVXXPPPPPPXXXXXPPPPXGGG 546
           PPP  V  P P P      PP P  GG
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGG 760



 Score = 29.1 bits (62), Expect = 0.84
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 466 PPPXXVXXPPPPPPXXXXXPPPPXGG 543
           P P  +  PPP P      PPPP  G
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
 Frame = +1

Query: 466 PPPXXVXX---PPPPPPXXXXXPPPP 534
           PPP  +     PPPPPP      PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
 Frame = +1

Query: 466 PPPXXVXXPPPPPP---XXXXXPPPP 534
           PP   +  PPPPPP        PPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +3

Query: 456 KNXPPPXXXXXXPPPPPPXXXXPPP-PXGGG 545
           K+ PPP      P P P     PPP P  GG
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGG 760



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 466 PPPXXVXXPPPPPPXXXXXPPPP 534
           P P     P PPP      PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPP 764



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 465 PPPXXXXXXPPPPPPXXXXPPPP 533
           P P       PPP P    PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPP 764



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 494 PPPPPXXXXPPPPXXGGGG 550
           PPPPP    PPPP    GG
Sbjct: 775 PPPPP----PPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
 Frame = +1

Query: 469 PPXXVXXPPPPP---PXXXXXPPPPXG 540
           PP     PPPPP   P     PPPP G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 491 PPPPPPXXXXPPPPXXGGGGGXXXKKKXXXP 583
           PPPPPP    P  P      G   K+K   P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
 Frame = +1

Query: 466 PPPXXVXXPPPP---PPXXXXXPPPP 534
           PP      PPPP   PP     PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 459 NXPPPXXXXXXPPPPPPXXXXPPPPXG 539
           N PPP       PP  P    PPPP G
Sbjct: 8   NPPPPPPPPGFEPPSQPP---PPPPPG 31


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 490 PPPPPPXXXXXPPPPXGGG 546
           PPPPPP       PP G G
Sbjct: 312 PPPPPPSRRNRGKPPIGNG 330


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 492  PPPPPPXXXXPPPP 533
            P PPPP    PPPP
Sbjct: 1705 PTPPPPPMSVPPPP 1718



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
 Frame = +1

Query: 466  PPPXXVXXPPPP-----PPXXXXXPPPP 534
            PPP  +  PPPP     P      PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
 Frame = +3

Query: 468  PPXXXXXXPPPPPPXXXXPP--PPXGGG 545
            PP      PPPPP     PP  PP   G
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAG 1726



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +1

Query: 460  TXPPPXXVXXPPPPPPXXXXXPP--PP 534
            T PPP     PPP  P     PP  PP
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 528 GGGXXXXGGGGGGXXXXXGGGGCF 457
           GGG    GGG GG     GG G F
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGF 210



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 540 PXXGGGGXXXXGGGGGGXXXXXGGGG 463
           P   GGG    GGG GG     GG G
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGPGGHG 269


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 494 PPPPPXXXXPPPPXXGGGGG 553
           PPPPP    PPPP     GG
Sbjct: 945 PPPPP----PPPPLVSAAGG 960


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,586,911
Number of Sequences: 5004
Number of extensions: 22408
Number of successful extensions: 386
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)