Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_D06
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 50 3e-07
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 50 4e-07
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 30 0.41
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 28 1.3
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 26 5.0
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 8.8
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 25 8.8
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 50.4 bits (115), Expect = 3e-07
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = -1
Query: 498 MANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAIL 325
++N D+TRL+ SDEI+ +++A RV RA +K NPL N + +LNPYA KA +
Sbjct: 284 ISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAY--KANV 341
Query: 324 ELRRRKNLKALAD 286
+L K KA +
Sbjct: 342 KLNTGKTPKAAGE 354
Score = 30.3 bits (65), Expect = 0.31
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 590 TQSAFXRLDPLFGSWKTPSKQKKNFNLP 507
T+SAF LD +FGS ++ KKN+ LP
Sbjct: 253 TKSAFGLLDSVFGSTTEAAQLKKNYFLP 280
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 50.0 bits (114), Expect = 4e-07
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = -1
Query: 498 MANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAIL 325
++N D+TRL+ SDEI+ +++A RV RA +K NPL N + +LNPYA KA +
Sbjct: 284 ISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAY--KANV 341
Query: 324 ELRRRKNLKALAD 286
++ K KA +
Sbjct: 342 KINSEKTPKAAGE 354
Score = 29.9 bits (64), Expect = 0.41
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 590 TQSAFXRLDPLFGSWKTPSKQKKNFNLP 507
T+SAF LD +FGS ++ KKN+ LP
Sbjct: 253 TKSAFGLLDSVFGSTTEVAQLKKNYFLP 280
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 29.9 bits (64), Expect = 0.41
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 352 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGR 513
+V +EF+ RL IG+RV+ AF+GS E + L+ + +T + ++ L LGR
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = -1
Query: 468 KSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA-- 295
+S + + +K+ IR R+L+P ++ + N Y+ + + ++ R R
Sbjct: 659 RSRSVTPINNINHKKYIRKDRELSPRGRERSSNR-NSYSDLSRSSSLSRGRSRSYTPEGR 717
Query: 294 LADAEKSGLKLSKRNPAMKAEKLRERRRKN 205
L ++E G + +PA + + R+R R++
Sbjct: 718 LIESEDKGYRSRSSSPASRKYRSRQRYRRS 747
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 5.0
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = -1
Query: 534 ETKEELQPAQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAM-LKLNP 358
ET L+ A + ++T LK DE+RK+ N + L + +++ + L+
Sbjct: 351 ETPVHLK-ADEREIRKEVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDK 409
Query: 357 YAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 211
+ K + +EL N LA+ E LKL + + R+RRR
Sbjct: 410 DEILTKTQVWMEL----NKDYLAEEEAKNLKLQEDLKKGIVRQPRKRRR 454
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = -1
Query: 528 KEELQPAQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPL 391
K++ Q ++ + + ++ RL + E+R + NK+ + KL L
Sbjct: 175 KQKKQRSEFRASKREMERLERDQELRNKIEERNKKELETIEKLREL 220
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/77 (18%), Positives = 36/77 (46%)
Frame = -1
Query: 546 EDTIETKEELQPAQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLK 367
E+ ++ +EELQ + K+ + K++ R + R P+ + + + L + ++
Sbjct: 361 EEVLQEEEELQKREEKLKSRFSANASKTNTPRPLERTPSS--VSPVKASSQLQSPNTSIQ 418
Query: 366 LNPYAAVLKRKAILELR 316
+ P ++ + + LR
Sbjct: 419 IRPQEQLINKPGYIILR 435
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,309
Number of Sequences: 5004
Number of extensions: 34858
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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