Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_D06
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           67   2e-11
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    63   3e-10
11_01_0205 + 1617044-1617197,1617845-1618233                           30   2.3  
02_04_0073 - 19471254-19472681                                         29   5.3  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
 Frame = -1

Query: 507 QPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAI 328
           +PKMAN DL R++ SDE++ V++  NK V R  ++ NPL N  A+LKLNPY    ++ A 
Sbjct: 286 RPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMAT 345

Query: 327 L-ELRRRKNLKALADAEKSGL 268
           L E  R K  K   D++++ L
Sbjct: 346 LAEAARIKARKEKLDSKRTKL 366


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
 Frame = -1

Query: 507 QPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAI 328
           +PKMAN DL+RL+ SDE++ V++  NK V     + NPL N  A+LKLNPY    ++ A 
Sbjct: 285 RPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAA 344

Query: 327 L-ELRRRKNLKALADAEKSGLKLSKRNPAMKAEK 229
           L E  R K      D++++ L   + +    A K
Sbjct: 345 LAEAARVKARTEKLDSKRTKLSPEESSKIKAAGK 378



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -2

Query: 590 TQSAFXRLDPLFGSWKTPSKQKKNFNLPSQRWPTLTSHVFSSLMRSG--RSSVLPTN 426
           T+ AF +LD ++G + TP+ +KK F LP    P + +   S L+ S   +S V P N
Sbjct: 257 TECAFKKLDEVYGGFDTPALKKKGFVLPR---PKMANADLSRLINSDEVQSVVKPIN 310


>11_01_0205 + 1617044-1617197,1617845-1618233
          Length = 180

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 361 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 450
           ++  HRLV G+  +F    +H FV S ++L
Sbjct: 35  LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 586 SPHSXGLTPYSXHGRHHRNKR 524
           +P   G +P S HG HHR+++
Sbjct: 20  APRPRGASPLSSHGHHHRSRK 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,580,062
Number of Sequences: 37544
Number of extensions: 259830
Number of successful extensions: 597
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)