Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_D02
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   0.71 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 22/95 (23%), Positives = 29/95 (30%), Gaps = 3/95 (3%)
 Frame = +3

Query: 654 PPXPXXAPPXXNXXPXXXXPXPXXXSPPXPXVRXXDGXAECXPG*YXXPGLPXPXXXLHX 833
           PP P    P  +  P      P    PP P +    G     P  +  PG   P   +H 
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPP-PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHH 266

Query: 834 XXSQKXPPRRXAXXP---LPASXXXXXXSQPXPPP 929
              +  PP      P   +P         +  PPP
Sbjct: 267 EPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 301



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/68 (25%), Positives = 22/68 (32%)
 Frame = +3

Query: 654 PPXPXXAPPXXNXXPXXXXPXPXXXSPPXPXVRXXDGXAECXPG*YXXPGLPXPXXXLHX 833
           PP P    P  +  P      P    PP P +    G     P  +  PG   P   +H 
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPP-PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHH 331

Query: 834 XXSQKXPP 857
              +  PP
Sbjct: 332 EPGEHMPP 339


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +3

Query: 636 PGXWGXPPXPXXAPPXXNXXPXXXXPXPXXXSPP 737
           P     PP P  APP  +  P    P     SPP
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/51 (31%), Positives = 18/51 (35%)
 Frame = +2

Query: 731  PPPXXCPPXXWRGXVXXRVIPXPXVAXPXRPSPPXXLPEXSTXPXCQXPXP 883
            PPP   PP           +P P    P  P+P    P  ST P    P P
Sbjct: 1211 PPPSTAPPVPTPS-AGLPPVPVPTAKAPPVPAPSSEAPSVST-PRSSVPSP 1259



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/57 (29%), Positives = 21/57 (36%)
 Frame = +2

Query: 674  APRPKPXPXEXLXXTXXXKPPPXXCPPXXWRGXVXXRVIPXPXVAXPXRPSPPXXLP 844
            AP P P P   +       P P   PP      +    +P P VA P  P P   +P
Sbjct: 1062 APPPVPAPSSEIPSI----PAPSGAPPVPAPSGIPP--VPKPSVAAPPVPKPSVAVP 1112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,440
Number of Sequences: 5004
Number of extensions: 18796
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)