Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_C23
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   206   3e-54
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   206   3e-54
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    30   0.42 
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.74 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.9  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   6.9  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.1  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  206 bits (503), Expect = 3e-54
 Identities = 101/161 (62%), Positives = 120/161 (74%)
 Frame = -2

Query: 593 GTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 414
           GT+R  P +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 413 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 234
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 233 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 31/50 (62%), Positives = 38/50 (76%)
 Frame = -1

Query: 705 REHLEKPIPVDSVFAQDEMIDCIGVTKXKGYKGVTXRWHTKKLPRKTHQG 556
           REH EK + + S F Q+EMID IGVT+ KG +G T RW TK+LPRKTH+G
Sbjct: 196 REHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRG 245



 Score = 31.1 bits (67), Expect = 0.18
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 751 IQLNGGTXEDKVKWAQRTFGET 686
           IQ+NGG+  DKV+WA+  F +T
Sbjct: 181 IQVNGGSVADKVEWAREHFEKT 202


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  206 bits (503), Expect = 3e-54
 Identities = 101/161 (62%), Positives = 120/161 (74%)
 Frame = -2

Query: 593 GTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 414
           GT+R  P +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 413 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 234
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 233 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 31/50 (62%), Positives = 38/50 (76%)
 Frame = -1

Query: 705 REHLEKPIPVDSVFAQDEMIDCIGVTKXKGYKGVTXRWHTKKLPRKTHQG 556
           REH EK + + S F Q+EMID IGVT+ KG +G T RW TK+LPRKTH+G
Sbjct: 196 REHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRG 245



 Score = 31.1 bits (67), Expect = 0.18
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 751 IQLNGGTXEDKVKWAQRTFGET 686
           IQ+NGG+  DKV+WA+  F +T
Sbjct: 181 IQVNGGSVADKVEWAREHFEKT 202


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 666 FAQDEMIDCIGVTKXKGYKGVTXRW 592
           F   + +D  G+TK KG+ GV  RW
Sbjct: 145 FKPKQYVDVKGITKGKGFAGVMKRW 169


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 402 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 500
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 369 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 491
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 132 HGYTQEGSYSRRSCGYHNPS 73
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 354 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 482
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 414 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 539
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,250
Number of Sequences: 5004
Number of extensions: 67837
Number of successful extensions: 194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)