Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_C21
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...   123   1e-28
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...   122   3e-28
U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr...    30   1.6  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score =  123 bits (297), Expect = 1e-28
 Identities = 66/135 (48%), Positives = 82/135 (60%)
 Frame = -2

Query: 512 LRLRGKVVKGEHGXRVRKIXNXXHFRRPKTFEXXXXXXXXXXXXXXRNXMDAYNIIKFPX 333
           L  + KVVKG+     R++    HFRRP T +               + MD + II+ P 
Sbjct: 13  LDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQHPL 72

Query: 332 TFEAAMKKIEDNNXLVFIVHTSANKHHIKAAVKKLYDINVGKVNTXIRPDGKKKAYVRLX 153
           T E+AMKKIE++N LVFIV   ANK+ IK AV KLY++   KVNT I P  +KKAYVRL 
Sbjct: 73  TTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVRLT 132

Query: 152 RDYDALDVAXXIGII 108
            DYDALDVA  IG+I
Sbjct: 133 ADYDALDVANKIGVI 147


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score =  122 bits (294), Expect = 3e-28
 Identities = 65/135 (48%), Positives = 81/135 (60%)
 Frame = -2

Query: 512 LRLRGKVVKGEHGXRVRKIXNXXHFRRPKTFEXXXXXXXXXXXXXXRNXMDAYNIIKFPX 333
           ++ +  VVKG      + +    HFRRPKT                R+ +D++ +IK P 
Sbjct: 12  IQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVIKAPH 71

Query: 332 TFEAAMKKIEDNNXLVFIVHTSANKHHIKAAVKKLYDINVGKVNTXIRPDGKKKAYVRLX 153
           T E++MKKIED+N LVFIV   ANKHHIK AV  LY++   KVNT I P  +KKAYVRL 
Sbjct: 72  TTESSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITPLQQKKAYVRLA 131

Query: 152 RDYDALDVAXXIGII 108
            DYDALDVA  IG I
Sbjct: 132 SDYDALDVANKIGFI 146


>U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical
           protein T14E8.1c protein.
          Length = 1018

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 108 YDANXVGNVQCVI-ISXESYVRFLLTIRPDXSVDFTNIYIIK 230
           YD   +   Q  + I+ ++YV+   ++RPD  VDF N+ + K
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRVDK 737


>U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical
           protein T14E8.1b protein.
          Length = 1030

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 108 YDANXVGNVQCVI-ISXESYVRFLLTIRPDXSVDFTNIYIIK 230
           YD   +   Q  + I+ ++YV+   ++RPD  VDF N+ + K
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRVDK 737


>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical
           protein T14E8.1a protein.
          Length = 1086

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 108 YDANXVGNVQCVI-ISXESYVRFLLTIRPDXSVDFTNIYIIK 230
           YD   +   Q  + I+ ++YV+   ++RPD  VDF N+ + K
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRVDK 737


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,076,421
Number of Sequences: 27780
Number of extensions: 201386
Number of successful extensions: 347
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)