Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_C20
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protei...    25   9.0  
M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.     25   9.0  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = +1

Query: 82  EXPPGGXXPPGEKXCFXXXXXPQXXXXXXXXXTPPPXXGXXXPPPP 219
           + PP G  PPG+         P           PPP  G   PPPP
Sbjct: 45  QAPPSGILPPGQSIPKPSFFIPPPVPNGFIP--PPPGPGGIPPPPP 88


>U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protein
           14 protein.
          Length = 345

 Score = 24.6 bits (51), Expect(2) = 9.0
 Identities = 12/41 (29%), Positives = 13/41 (31%)
 Frame = +1

Query: 91  PGGXXPPGEKXCFXXXXXPQXXXXXXXXXTPPPXXGXXXPP 213
           PG   PPGE   +     P           PP   G   PP
Sbjct: 251 PGRPGPPGEPGTYKTEVGPAGRAGAPGRPGPPGQPGPAGPP 291



 Score = 21.4 bits (43), Expect(2) = 9.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 82  EXPPGGXXPPGE 117
           E PPG   PPG+
Sbjct: 203 EAPPGDGGPPGQ 214


>M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.
          Length = 326

 Score = 24.6 bits (51), Expect(2) = 9.0
 Identities = 12/41 (29%), Positives = 13/41 (31%)
 Frame = +1

Query: 91  PGGXXPPGEKXCFXXXXXPQXXXXXXXXXTPPPXXGXXXPP 213
           PG   PPGE   +     P           PP   G   PP
Sbjct: 232 PGRPGPPGEPGTYKTEVGPAGRAGAPGRPGPPGQPGPAGPP 272



 Score = 21.4 bits (43), Expect(2) = 9.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 82  EXPPGGXXPPGE 117
           E PPG   PPG+
Sbjct: 184 EAPPGDGGPPGQ 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,884,389
Number of Sequences: 27780
Number of extensions: 91885
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)