Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_C17
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.17
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.17
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.17
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.39
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.39
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.39
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.39
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.39
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 3.7
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/57 (35%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Frame = -2
Query: 771 GGXGXXXXXPPXKPPPGXXP--XKXPPPXXRKXPPXXXXXXXPAQXXPXKXXGXPPP 607
GG PP PPPG P PPP PP P P G PPP
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPP---PPPPPGGCPPPPPPPPPGGFKGGPPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/57 (35%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Frame = -2
Query: 771 GGXGXXXXXPPXKPPPGXXP--XKXPPPXXRKXPPXXXXXXXPAQXXPXKXXGXPPP 607
GG PP PPPG P PPP PP P P G PPP
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPP---PPPPPGGCPPPPPPPPPGGFKGGPPP 786
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/57 (35%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Frame = -2
Query: 771 GGXGXXXXXPPXKPPPGXXP--XKXPPPXXRKXPPXXXXXXXPAQXXPXKXXGXPPP 607
GG PP PPPG P PPP PP P P G PPP
Sbjct: 316 GGLPPITGGPPPPPPPGGLPPISGGPPP---PPPPPGGCPPPPPPPPPGGFKGGPPP 369
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = -2
Query: 744 PPXKPPPGXXPXKXPPPXXRKXPPXXXXXXXPAQXXPXKXXGXPPP 607
PP P PG P PPP PP P PPP
Sbjct: 275 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 320
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Frame = -2
Query: 744 PPXKPPPGXXPXKX-------PPPXXRKXPPXXXXXXXPAQXXPXKXXGXPPP 607
PP PPPG P PPP R PP P G PPP
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP 350
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = -2
Query: 744 PPXKPPPGXXPXKXPPPXXRKXPPXXXXXXXPAQXXPXKXXGXPPP 607
PP P PG P PPP PP P PPP
Sbjct: 285 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 330
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Frame = -2
Query: 744 PPXKPPPGXXPXKX-------PPPXXRKXPPXXXXXXXPAQXXPXKXXGXPPP 607
PP PPPG P PPP R PP P G PPP
Sbjct: 308 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP 360
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/62 (29%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Frame = -2
Query: 762 GXXXXXPPXKPPPGXXPXKXPPPXXRKXPPXXXXXXXP--AQXXPXKXXGXPPPAXXXXK 589
G P PPP PPP PP P P + G PPPA
Sbjct: 270 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSP 329
Query: 588 XP 583
P
Sbjct: 330 PP 331
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = -2
Query: 771 GGXGXXXXXPPXKPPPGXXPXKXPPPXXRKXPPXXXXXXXPAQXXPXKXXGXPPP 607
G G P PPP P PP PP P P G PPP
Sbjct: 224 GFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSP----PPPRTGSPPP 274
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/62 (29%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Frame = -2
Query: 762 GXXXXXPPXKPPPGXXPXKXPPPXXRKXPPXXXXXXXP--AQXXPXKXXGXPPPAXXXXK 589
G P PPP PPP PP P P + G PPPA
Sbjct: 291 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSP 350
Query: 588 XP 583
P
Sbjct: 351 PP 352
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = -2
Query: 771 GGXGXXXXXPPXKPPPGXXPXKXPPPXXRKXPPXXXXXXXPAQXXPXKXXGXPPP 607
G G P PPP P PP PP P P G PPP
Sbjct: 245 GFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSP----PPPRTGSPPP 295
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/62 (29%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Frame = -2
Query: 762 GXXXXXPPXKPPPGXXPXKXPPPXXRKXPPXXXXXXXP--AQXXPXKXXGXPPPAXXXXK 589
G P PPP PPP PP P P + G PPPA
Sbjct: 276 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSP 335
Query: 588 XP 583
P
Sbjct: 336 PP 337
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = -2
Query: 771 GGXGXXXXXPPXKPPPGXXPXKXPPPXXRKXPPXXXXXXXPAQXXPXKXXGXPPP 607
G G P PPP P PP PP P P G PPP
Sbjct: 230 GFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSP----PPPRTGSPPP 280
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = -1
Query: 745 TPGXTXPGXEXXKKXPPXXPKXPPXXXXXXXPXPXXPPXXXRXXPP 608
+PG P E PP P PP P P PP PP
Sbjct: 228 SPGPVDPSDEPSPSDPPGPP-GPPGPPTRRPPGPPGPPTRRPPGPP 272
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/56 (32%), Positives = 20/56 (35%)
Frame = -2
Query: 771 GGXGXXXXXPPXKPPPGXXPXKXPPPXXRKXPPXXXXXXXPAQXXPXKXXGXPPPA 604
GG PP PP G + PPP PP P P G PPP+
Sbjct: 1564 GGMNGWRGGPP--PPRGGSHCQGPPPLMGGPPP---RLGMPPPGPPPPNGGPPPPS 1614
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,767,425
Number of Sequences: 27780
Number of extensions: 123489
Number of successful extensions: 813
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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