Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_C16
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical pr...    31   0.72 
V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein ( Caeno...    31   0.72 
J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein ( C.ele...    31   0.72 
U23520-6|AAC46553.1|  287|Caenorhabditis elegans Collagen protei...    29   3.8  
U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protei...    29   5.1  
AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen prot...    29   5.1  
Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z74037-4|CAA98490.1|  295|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AL032627-21|CAD66221.1|  289|Caenorhabditis elegans Hypothetical...    28   8.9  

>Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical
           protein F23H12.4 protein.
          Length = 301

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = +3

Query: 423 PAGXXXXPXPAGXXXPCALXXXIXXXTPRXPGGSXGXGXPXHPXRSGXVXLXXGPP 590
           PAG    P PAG     A+   +    P  PG S   G P  P   G      GPP
Sbjct: 193 PAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDG-PPGPP 247


>V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-1 coding for a collagen.
           ).
          Length = 296

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = +3

Query: 423 PAGXXXXPXPAGXXXPCALXXXIXXXTPRXPGGSXGXGXPXHPXRSGXVXLXXGPP 590
           PAG    P PAG     A+   +    P  PG S   G P  P   G      GPP
Sbjct: 188 PAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDG-PPGPP 242


>J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 1 (col-1) gene, complete
           cds. ).
          Length = 296

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = +3

Query: 423 PAGXXXXPXPAGXXXPCALXXXIXXXTPRXPGGSXGXGXPXHPXRSGXVXLXXGPP 590
           PAG    P PAG     A+   +    P  PG S   G P  P   G      GPP
Sbjct: 188 PAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDG-PPGPP 242


>U23520-6|AAC46553.1|  287|Caenorhabditis elegans Collagen protein
           175 protein.
          Length = 287

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/79 (27%), Positives = 23/79 (29%)
 Frame = -2

Query: 680 GXRRXXGXXGXXGSFPXXGXXAKXXXXPGXRGSPXEXHAPTSXGVXXXAXXPGTXXXPGG 501
           G R   G  G  G  P  G        PG  G+P     P   G       PG    PG 
Sbjct: 148 GPRGPRGDAGPPGP-PGNGGRPGQRGTPGEAGTPGPVGEPGETGGPGPQGRPGQRGEPGQ 206

Query: 500 XXXYVXXXGTGRVXPGGXR 444
                     GR  P G R
Sbjct: 207 PGTVHTPGNPGRPGPQGPR 225


>U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protein
           20 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/64 (26%), Positives = 19/64 (29%)
 Frame = -2

Query: 695 PXXXXGXRRXXGXXGXXGSFPXXGXXAKXXXXPGXRGSPXEXHAPTSXGVXXXAXXPGTX 516
           P    G +   G  G  G+    G        PG  G P E   P   G       PG  
Sbjct: 181 PPGPGGPQGEAGEDGGAGNPGTPGQVRSLPSPPGEPGQPGEPGGPGEPGADGRPGHPGRA 240

Query: 515 XXPG 504
             PG
Sbjct: 241 GPPG 244


>AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen protein
           109 protein.
          Length = 291

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/50 (36%), Positives = 19/50 (38%)
 Frame = +1

Query: 451 PPGXTRPVPXXST*XXXPPGXXXVPGXXAXXXTPLEVGAXXSXGDPRXPG 600
           PPG   P P   T     PG    PG      TP  VG   + GD   PG
Sbjct: 141 PPGP--PGPQGPTGNSGQPGRPGNPGRPGSPGTPGPVGPNGASGDSGAPG 188


>Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.3 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/64 (28%), Positives = 19/64 (29%)
 Frame = -2

Query: 695 PXXXXGXRRXXGXXGXXGSFPXXGXXAKXXXXPGXRGSPXEXHAPTSXGVXXXAXXPGTX 516
           P    G     G  G  G     G        PG  G P E  +P   G    A  PG  
Sbjct: 176 PPGPRGPPGEAGPDGEGGRPGQAGQTRSAPSPPGQPGQPGEPGSPGEPGPDGRAGHPGRN 235

Query: 515 XXPG 504
             PG
Sbjct: 236 GPPG 239


>Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.2 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/64 (28%), Positives = 19/64 (29%)
 Frame = -2

Query: 695 PXXXXGXRRXXGXXGXXGSFPXXGXXAKXXXXPGXRGSPXEXHAPTSXGVXXXAXXPGTX 516
           P    G     G  G  G     G        PG  G P E  +P   G    A  PG  
Sbjct: 176 PPGPRGPPGEAGPDGEGGRPGQAGQTRSAPSPPGQPGQPGEPGSPGEPGPDGRAGHPGRN 235

Query: 515 XXPG 504
             PG
Sbjct: 236 GPPG 239


>Z74037-4|CAA98490.1|  295|Caenorhabditis elegans Hypothetical
           protein F57B7.3 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/57 (29%), Positives = 21/57 (36%)
 Frame = -2

Query: 674 RRXXGXXGXXGSFPXXGXXAKXXXXPGXRGSPXEXHAPTSXGVXXXAXXPGTXXXPG 504
           RR  G  G  G+ P           PG  G+P +  AP + G       PG    PG
Sbjct: 199 RRGRGTPGAPGA-PGAAGAPGNNGQPGQDGAPGQAGAPGASGPDGQPGQPGEDGQPG 254


>AL032627-21|CAD66221.1|  289|Caenorhabditis elegans Hypothetical
           protein Y41C4A.19 protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/64 (28%), Positives = 20/64 (31%)
 Frame = -2

Query: 695 PXXXXGXRRXXGXXGXXGSFPXXGXXAKXXXXPGXRGSPXEXHAPTSXGVXXXAXXPGTX 516
           P    G R   G  G  G+    G  A+    PG  G       P S G       PG  
Sbjct: 171 PAGPKGQRGAPGHPGQAGAPGQPGVDAQSQSTPGAPGQAGPQGPPGSSGAPGAPGGPGFP 230

Query: 515 XXPG 504
             PG
Sbjct: 231 GAPG 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,383,087
Number of Sequences: 27780
Number of extensions: 128919
Number of successful extensions: 1021
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)