Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_C14
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0495 + 9880714-9881196                                           33   0.054
05_01_0568 + 4973031-4973161,4973514-4974321,4974394-4974690           29   4.8  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    23   8.5  
02_05_0686 - 30900748-30902167,30903442-30904742                       25   8.9  

>09_02_0495 + 9880714-9881196
          Length = 160

 Score = 33.1 bits (72), Expect(2) = 0.054
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -3

Query: 375 GGXXGXFFSPPPPXXXXGXXXPPXGGXVP 289
           GG  G  + PPPP    G   PP GG  P
Sbjct: 72  GGLFGGTYPPPPPGVMPGAFAPPFGGGFP 100



 Score = 21.0 bits (42), Expect(2) = 0.054
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -3

Query: 546 PPXGGXXXXXPPPPXXG 496
           P  GG     PPPP  G
Sbjct: 41  PIAGGAVNSYPPPPPAG 57


>05_01_0568 + 4973031-4973161,4973514-4974321,4974394-4974690
          Length = 411

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
 Frame = +3

Query: 204 KGGGFFSPXNRGPXFXPXXWGXEXIXF--XXGPPXPPGXXXP--XXXFXGGG 347
           +GG  F+P  RGP F     G   +      GP   PG   P     F GGG
Sbjct: 144 RGGPVFAPGRRGPVFAAGFHGGGPVFAAGRGGPVFAPGRRGPVFAAGFHGGG 195



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
 Frame = +3

Query: 204 KGGGFFSPXNRGPXFXPXXWGXEXIXF--XXGPPXPPGXXXP--XXXFXGGG 347
           +GG  F+P  RGP F     G   +      GP   PG   P     F GGG
Sbjct: 202 RGGPVFAPGRRGPVFAAGFHGGGPVFAAGRGGPVFAPGRRGPVFAAGFHGGG 253


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 23.4 bits (48), Expect(2) = 8.5
 Identities = 19/65 (29%), Positives = 20/65 (30%)
 Frame = -2

Query: 391  PPXHXGGXXXXFFFPPPPXXXXXGXXXPGGXGGPXKXQIXSFPQXXGXXXGPRFXGEKNP 212
            PP   GG       PPPP     G   P   GG         P+  G   GP        
Sbjct: 1150 PPPPVGGLGGPPA-PPPPAGFRGGTPPPNAHGGVAPPPPP--PRGHGGVGGPPTPPGAPA 1206

Query: 211  PPF*P 197
            PP  P
Sbjct: 1207 PPMPP 1211



 Score = 22.6 bits (46), Expect(2) = 8.5
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -2

Query: 565  GXXXXXPPXXGXXXXXXPPPXXGGGG 488
            G     PP  G      PPP  G GG
Sbjct: 1107 GAPPPPPPPGGITGVPPPPPIGGLGG 1132


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 25.0 bits (52), Expect(2) = 8.9
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -3

Query: 390 PXXTXGGXXGXFFSPPPPXXXXGXXXPPXGGXVP 289
           P    GG  G    PPPP    G   PP    VP
Sbjct: 366 PPPPPGGKKG---GPPPPPPKGGASRPPAAPGVP 396



 Score = 21.0 bits (42), Expect(2) = 8.9
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -3

Query: 546 PPXGGXXXXXPPPPXXGG 493
           PP        PPPP  GG
Sbjct: 355 PPPPPKGPSPPPPPPPGG 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,018,799
Number of Sequences: 37544
Number of extensions: 279540
Number of successful extensions: 701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)