Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_C12
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.4  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   7.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   7.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/54 (31%), Positives = 17/54 (31%)
 Frame = -2

Query: 645 PPPPPXXXFXXXPPPPXKXXXGGXXXGXXXXXXGGXXXXPPPXGGGGXGXGXPP 484
           PPPPP       P P                  GG    PPP G  G G   PP
Sbjct: 732 PPPPPPAVIVPTPAPAP------IPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 485 GGXPXPXPPPPXGGGXXXXPP 547
           GG P P PPP   G     PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 646 PPPPPXXXFXXXPPPP 599
           PPPPP       PPPP
Sbjct: 764 PPPPPGVAGAGPPPPP 779



 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
 Frame = +2

Query: 494 PXPXPPP-PXGGG--XXXXPPXXXXXXPXXXPPXXXFXGGGG 610
           P P PPP P  GG      PP      P   PP       GG
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 647 PPPPPXXXFFXXXPPPP 597
           PPPPP        PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/53 (24%), Positives = 15/53 (28%)
 Frame = -2

Query: 609 PPPPXKXXXGGXXXGXXXXXXGGXXXXPPPXGGGGXGXGXPPXXKKXKKKXPP 451
           PPPP +   G    G            PPP          PP  +      PP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/58 (27%), Positives = 16/58 (27%)
 Frame = -3

Query: 647 PPPPPXXXFFXXXPPPPXKXXXGGXXXXXXXXXXGXXXXXPPPXGGGGGGXXXPPXXK 474
           PPPP         PPPP     G                 PPP     G    PP  K
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPFK 343


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 645 PPPPPXXXFXXXPPPP 598
           PPPPP       PPPP
Sbjct: 12  PPPPPGFEPPSQPPPP 27



 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 647 PPPPPXXXFFXXXPPPP 597
           PPPPP   F     PPP
Sbjct: 10  PPPPPPPGFEPPSQPPP 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,885
Number of Sequences: 5004
Number of extensions: 25577
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)