Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_C11
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p... 223 3e-59
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom... 173 3e-44
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 29 0.96
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 3.9
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 6.8
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 26 6.8
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 9.0
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 9.0
>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 289
Score = 223 bits (544), Expect = 3e-59
Identities = 106/205 (51%), Positives = 139/205 (67%)
Frame = -3
Query: 750 NVFXXCGXXWNYGALPQTWENXNHVDPDTGARGDNDPVDVIEIGERVASRGDVYPVKILG 571
N F G WNYGA PQT+E+ N V P+T A+GD+DP+DV EIGE G V VK+LG
Sbjct: 84 NCFPHHGYIWNYGAFPQTYEDPNVVHPETKAKGDSDPLDVCEIGEARGYTGQVKQVKVLG 143
Query: 570 TLALIDEGETDWKLIAIDSRDPNAEKLNDVQDVETLFPGLLRATVEWFRLYKVPDGKPVN 391
+AL+DEGETDWK+I ID DP A KLND++DVE PGL+RAT EWFR+YK+PDGKP N
Sbjct: 144 VMALLDEGETDWKVIVIDVNDPLAPKLNDIEDVERHMPGLIRATNEWFRIYKIPDGKPEN 203
Query: 390 KFAFDGEAKNAEFAYKVVDEVHEFWKSLISGNVPDATDINKMNVSVSGSVDRAERSEAAA 211
FAF GE KN ++A +VV E +E W+ LI+G +D + +NVSV+GSV A ++
Sbjct: 204 SFAFSGECKNRKYAEEVVRECNEAWERLITGKTDAKSDFSLVNVSVTGSV--ANDPSVSS 261
Query: 210 VLAKAPTLGQPAAIPQTVDKWHFLA 136
+ A L PA + +V KW +++
Sbjct: 262 TIPPAQELA-PAPVDPSVHKWFYIS 285
>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 173 bits (420), Expect = 3e-44
Identities = 75/146 (51%), Positives = 96/146 (65%)
Frame = -3
Query: 750 NVFXXCGXXWNYGALPQTWENXNHVDPDTGARGDNDPVDVIEIGERVASRGDVYPVKILG 571
N F G WNYGALPQTWE+ N +D T +GD DP+DV EIG + G + VK+LG
Sbjct: 89 NSFPYHGFIWNYGALPQTWEDPNVIDSRTKMKGDGDPLDVCEIGGSIGYIGQIKQVKVLG 148
Query: 570 TLALIDEGETDWKLIAIDSRDPNAEKLNDVQDVETLFPGLLRATVEWFRLYKVPDGKPVN 391
L LID+GETDWK++AID DP A+ LND+ DV+ L P LL T +WF +YK+PDGKP N
Sbjct: 149 ALGLIDQGETDWKILAIDINDPRAKLLNDISDVQNLMPRLLPCTRDWFAIYKIPDGKPKN 208
Query: 390 KFAFDGEAKNAEFAYKVVDEVHEFWK 313
+F FDG A ++ + H+ WK
Sbjct: 209 RFFFDGNYLPKSDALDIIAQCHQHWK 234
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 28.7 bits (61), Expect = 0.96
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 414 VPDGKPVNKFAFDGEAKN 361
+PDGKP+NK A+ E +N
Sbjct: 505 IPDGKPLNKIAWQPEKRN 522
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 360 AEFAYKVVDEVHEFWKSLISGNVPDATD 277
A+F YK++D W SL+ +P+ TD
Sbjct: 35 AKFVYKLLDYTKGNWLSLLLRFLPETTD 62
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 6.8
Identities = 19/70 (27%), Positives = 27/70 (38%)
Frame = -3
Query: 672 PDTGARGDNDPVDVIEIGERVASRGDVYPVKILGTLALIDEGETDWKLIAIDSRDPNAEK 493
P A P+ + S YP +I+ T + + E DW + S PN E
Sbjct: 218 PSDSANSSVTPIAAPLVVNGKVSGNPPYPAEIIPTSNVPNREEKDW---TVTSNVPNKEP 274
Query: 492 LNDVQDVETL 463
VQ + TL
Sbjct: 275 PISVQLLHTL 284
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.8 bits (54), Expect = 6.8
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = +2
Query: 401 LPSGTL*SLNHSTVARRRPGNNVSTSCTSFNFSAFGSRESIAISFQSVSPSSMRASVPRI 580
L + + +N S + +N S S S + R + A QS+ P+S+ +S+
Sbjct: 392 LSANQIFGMNQSVIGANSGSSNSSGS--SLKSAPVSPRTAAA---QSLLPNSVVSSI--- 443
Query: 581 FTG*TSPRLATRSPISMTSTGSLSPLAPVSGS 676
G S +T SP ++ + S+SP SGS
Sbjct: 444 -NGMNSVNFSTISPPPLSRSASISPTLSGSGS 474
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3
Query: 294 VPDATDINKMNVS-VSGSVDRAERSEAAAVLAKAPTLGQPAAIP 166
VP+A +++ + V+ V A + AA V+ +AP++ Q A+P
Sbjct: 523 VPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVP 566
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 375 GEAKNAEFAYKVVDEVHEFWKSLIS 301
GE ++ + K+ D++H F+KSL S
Sbjct: 407 GEELASQISSKIYDDLHAFYKSLNS 431
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,619
Number of Sequences: 5004
Number of extensions: 46473
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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