Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_C07
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.73 
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    26   6.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 34/138 (24%), Positives = 40/138 (28%), Gaps = 9/138 (6%)
 Frame = +2

Query: 374  PPPHXPPXXPPPXXGXXXLXGXXA----XXXXPXXXXXXVXSXGVAXXARPPRPXPGXXX 541
            P P  PP  PPP      L    +               V +   A  AR P P P    
Sbjct: 961  PRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVP-PVPKLSS 1019

Query: 542  PXPXAXXPSAXGRPXPPXS--GPXXXXXXPPRXXRXRXGXRXLAGXXPXGXSAXXSFPSX 715
              P    PSA   P P  S   P       P   +   G        P   S   S P+ 
Sbjct: 1020 KAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP 1079

Query: 716  XXSPGXP---XLPPXAXP 760
              +P  P    +PP   P
Sbjct: 1080 SGAPPVPAPSGIPPVPKP 1097


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 491 GVAXXARPPRPXPGXXXPXPXAXXPSAXGRPXPPXSG 601
           G+    +PP   PG   P P A   S   +  PP +G
Sbjct: 204 GMPSNQKPPNFAPGMPAPGPTAVSASPSLQSMPPTNG 240


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +2

Query: 512 PPRPXPGXXXPXPXAXXPSAXGRPXPPXSGP 604
           PP P  G   P P     +  G P PP   P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,454,684
Number of Sequences: 5004
Number of extensions: 15177
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)