Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_C04
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.46 
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.60 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.80 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.6  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   7.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
 Frame = +2

Query: 626  ATXXXCPXXRASPXXXPRXPXXPXXPXPXXXXSKXXPXLVXP---PPXPXPLXPXXXPDX 796
            +T    P   ++P         P  P P    S   P +  P   PP P P      P  
Sbjct: 1038 STAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP 1097

Query: 797  TXXXPPXPK 823
            +   PP PK
Sbjct: 1098 SVAAPPVPK 1106



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/71 (23%), Positives = 20/71 (28%)
 Frame = +2

Query: 608  PXPXXXATXXXCPXXRASPXXXPRXPXXPXXPXPXXXXSKXXPXLVXPPPXPXPLXPXXX 787
            P P   +     P    +P   P     P  P P           V  PP P P      
Sbjct: 1065 PVPAPSSEIPSIPAPSGAPPV-PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPV 1123

Query: 788  PDXTXXXPPXP 820
            P  +   PP P
Sbjct: 1124 PKPSVAAPPVP 1134



 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/71 (21%), Positives = 17/71 (23%)
 Frame = +2

Query: 608  PXPXXXATXXXCPXXRASPXXXPRXPXXPXXPXPXXXXSKXXPXLVXPPPXPXPLXPXXX 787
            P P         P    +P         P  P P              PP P P      
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPV 1200

Query: 788  PDXTXXXPPXP 820
            P  +   PP P
Sbjct: 1201 PKPSVGVPPVP 1211


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -2

Query: 336 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 238
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
 Frame = +3

Query: 606  PRRPXXXPPXXXALXXXPPPXX--PPVXXXPXXXXPPXXXPPKXLPXXSXXPXXPYLSXR 779
            P RP    P   +    PPP    PP    P     P   PP  LP  S  P  P    R
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP-ASSAPSVPNPGDR 1749

Query: 780  XXXLTQ 797
               L Q
Sbjct: 1750 SALLQQ 1755


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = +2

Query: 656 ASPXXXPRXPXXPXXPXPXXXXSKXXPXLVXPPPXPXP 769
           A+P   P  P  P  P          P    PPP P P
Sbjct: 445 AAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 327 PPPLRSLISNLSNTCDLTPLPEW 259
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = +3

Query: 615 PXXXPPXXXALXXXPPPXXPPVXXXPXXXXPPXXXP 722
           P   PP    +   PPP  PP         PP   P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,402,626
Number of Sequences: 5004
Number of extensions: 16508
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)