Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_C01
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0515 - 3864796-3865425 31 1.1
04_03_0904 + 20717005-20718087 31 1.5
12_02_0304 + 17112677-17113195 30 2.0
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 2.0
12_02_0305 - 17235832-17236379,17237345-17237444 29 3.4
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 3.4
12_02_1174 - 26696869-26698191 29 4.5
02_05_0868 + 32342967-32343915,32344389-32344447 29 4.5
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 6.0
07_03_0091 + 13312904-13313647 28 7.9
>03_01_0515 - 3864796-3865425
Length = 209
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +3
Query: 678 PPRXNPXXXXPXPSPTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPPP 824
PP P P P L + P P P P P P PPP
Sbjct: 72 PPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPPPPP 120
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/49 (30%), Positives = 18/49 (36%)
Frame = +3
Query: 678 PPRXNPXXXXPXPSPTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPPP 824
PP P P P P++ + P P P P P P PPP
Sbjct: 63 PPAAGPLMPPPPPPPSV--------TSSPPPPPLPPPPPPPAASPPPPP 103
>04_03_0904 + 20717005-20718087
Length = 360
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/49 (28%), Positives = 16/49 (32%)
Frame = +3
Query: 678 PPRXNPXXXXPXPSPTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPPP 824
PP+ P P P PT + P P P P P P P
Sbjct: 118 PPKPTPPTYKPQPKPTPAPYTPTPTPPTYKPQPKPTPPPTYKPQPKPTP 166
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = +3
Query: 678 PPRXNPXXXXPXPSPTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPPP 824
PP P P P+P + P P P P PTPPP
Sbjct: 109 PPTYTPTPTPPKPTPPTYKPQPKPTPAPYTPTPTP-PTYKPQPKPTPPP 156
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +3
Query: 678 PPRXNPXXXXPXPSPTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPPP 824
PP P P P+PT S P P P P P PPP
Sbjct: 195 PPSYKPQ---PKPTPTPYTPTPTPPSYKPQPKPNPPPTYKPQPKPNPPP 240
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +3
Query: 681 PRXNPXXXXPXPSPTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPP 821
P P P P PT + P P P P P PTPP
Sbjct: 171 PTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTP-TPYTPTPTPP 216
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +3
Query: 681 PRXNPXXXX-PXPSPTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPPP 824
P+ NP P P PT + P P P P P P PPP
Sbjct: 253 PKPNPPPTYKPQPKPTPTPYTPPTYKPQPKPTPTPTPYTP-TPKPNPPP 300
>12_02_0304 + 17112677-17113195
Length = 172
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Frame = +3
Query: 678 PPRXNPXXXXPXP----SPTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPPP 824
PPR NP P P SP+++ P P P P PT PP
Sbjct: 30 PPRRNPPRAPPSPRRAPSPSVTAEPTPAPVIAPSPPPVVAPSQPLVVAPTQPP 82
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = +3
Query: 681 PRXNPXXXXPXPSPTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPPP 824
P +P P P P + Q P P P P P P+PPP
Sbjct: 559 PAFSPPPPPPPPPP--PPLPQSNYASSQPPPPPPPPPLPNCLVPSPPP 604
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/49 (28%), Positives = 16/49 (32%)
Frame = +3
Query: 678 PPRXNPXXXXPXPSPTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPPP 824
PP N P+P L + P P P P P PPP
Sbjct: 718 PPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPPP 766
>12_02_0305 - 17235832-17236379,17237345-17237444
Length = 215
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Frame = +3
Query: 678 PPRXNPXXXXPXPS----PTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPPP 824
PPR NP P P P++S P P P P PT PP
Sbjct: 73 PPRRNPPRAPPSPRRASPPSVSVEPTPAPVIAPSPPPVVAPSQPPTIAPTQPP 125
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.5 bits (63), Expect = 3.4
Identities = 26/121 (21%), Positives = 28/121 (23%)
Frame = +3
Query: 462 PPXXPXXAKXSXXPXXSXGXPXXXXXXXXXXXXXXXXXPPXLXXVPXXXPXXHXGXGXPX 641
PP P G P PP L P P
Sbjct: 11 PPPPQGGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQF 70
Query: 642 XRXRGXSSXARXPPRXNPXXXXPXPSPTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPP 821
G + PP P P P + Q P P P P P P PP
Sbjct: 71 NFGPGPPQQQQPPPPPQMYYQPPPPPPPYGV------NSSQPPPPPPPPPSPPPSAPPPP 124
Query: 822 P 824
P
Sbjct: 125 P 125
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/48 (29%), Positives = 15/48 (31%)
Frame = +3
Query: 681 PRXNPXXXXPXPSPTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPPP 824
P+ P P P P P P P P P P PPP
Sbjct: 179 PQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPP 226
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/51 (27%), Positives = 17/51 (33%)
Frame = +3
Query: 672 RXPPRXNPXXXXPXPSPTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPPP 824
+ PP +P P P T + P P P P P PPP
Sbjct: 114 KTPPALSPVPPPPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPP 164
>02_05_0868 + 32342967-32343915,32344389-32344447
Length = 335
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/49 (30%), Positives = 18/49 (36%)
Frame = +3
Query: 678 PPRXNPXXXXPXPSPTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPPP 824
PP P P+P + R P P P P P P+PPP
Sbjct: 89 PPVAAPGRAFRQPAPAVPGRAFRQPGPAPAPSPAPAP--PRRRMPSPPP 135
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +3
Query: 678 PPRXNPXXXXPXPSPTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPPP 824
PP P P PS + S P P P P P PPP
Sbjct: 1138 PPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPP 1186
>07_03_0091 + 13312904-13313647
Length = 247
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/48 (31%), Positives = 17/48 (35%)
Frame = +3
Query: 681 PRXNPXXXXPXPSPTLSXXXXRXXSXXQXPXPXPXPXXPXXXXPTPPP 824
P+ NP P P PTL + P P P P P P P
Sbjct: 120 PQPNPQ---PDPKPTLQPNPKQDPQPNPQPNPKPTPQLDPKQDPQPNP 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,099,825
Number of Sequences: 37544
Number of extensions: 162583
Number of successful extensions: 827
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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