Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_B20
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304... 33 0.31
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458... 29 2.9
04_04_0772 + 27970494-27972875 29 2.9
12_01_0302 - 2286171-2286341,2286747-2286968 29 3.9
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.1
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 5.1
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.1
01_06_1313 - 36212524-36213669 29 5.1
09_04_0220 - 15813809-15815380 28 6.7
03_02_0253 - 6839543-6839623,6839725-6839805,6839935-6839976,684... 28 6.7
02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530 28 6.7
01_05_0014 - 17162664-17163500 28 6.7
11_06_0610 - 25449085-25453284 28 8.9
03_02_0816 + 11487811-11488708,11488835-11489235 28 8.9
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 8.9
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 28 8.9
>01_03_0088 +
12327339-12328092,12329474-12329601,12330249-12330474,
12332638-12332765,12332880-12333033,12333408-12333841
Length = 607
Score = 32.7 bits (71), Expect = 0.31
Identities = 22/55 (40%), Positives = 25/55 (45%)
Frame = -1
Query: 507 VSPPYFQVNDESQASRLISRHSTHTPLPSSNSPPHRRCRHGHKPSHHRL*SQNRR 343
+SPP Q S+A R S PLP+ P HRR PS RL S RR
Sbjct: 1 MSPPPPQRPSPSRAGRANLFSSPPPPLPNCYDPKHRRPAPPPLPSARRLPSNRRR 55
>08_01_0527 +
4580599-4580818,4580933-4581806,4581891-4581955,
4582055-4582110,4582955-4583058,4583310-4583382,
4583474-4583654,4584537-4584622
Length = 552
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = -1
Query: 513 KGVSPPYFQVNDESQASRLIS---RHSTH-TPLPSSNSPPHRRCRH-GHKP 376
K + PP+ +V +S+ + +S R + H + P SPP RR RH H+P
Sbjct: 258 KDLLPPWRRVRHDSEEPKDLSPPRRRTRHDSEEPEDLSPPRRRTRHDSHEP 308
>04_04_0772 + 27970494-27972875
Length = 793
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 449 RLIRREACDSSFTWK*GGETPLXMPSDEGVRYADGASDDNGGFTPGANSFXYGV 610
+LI + S WK G +P +EG +S G F PGAN Y V
Sbjct: 206 KLIGARSYFESAKWKWKGLRDPVLPINEGQHGTHTSSTAAGSFVPGANVSGYAV 259
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 86 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 187
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 78 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNHPDVVV 224
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -1
Query: 585 PGVKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISRHSTHTPLPSSNSPP 406
PG PP +S PS P + SPP SQ++ + +P PS SPP
Sbjct: 1152 PGSSPPPASPPPSTPSAPPTNSSGSAPSPP-----SPSQSAPPANTGGGGSPPPSHGSPP 1206
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -2
Query: 245 PPFDTVLYDNIRMVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 66
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 65 ILHSF 51
+LHSF
Sbjct: 1408 LLHSF 1412
>01_06_1313 - 36212524-36213669
Length = 381
Score = 28.7 bits (61), Expect = 5.1
Identities = 23/76 (30%), Positives = 34/76 (44%)
Frame = -1
Query: 594 EFAPGVKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISRHSTHTPLPSSN 415
E GV+PP + E S S L M + P ++DE + + +R + L +
Sbjct: 73 ESPSGVRPPPARERDSVDDDRSGLAMIRSGGPRATSLSDEG-SDLIGARVCFISILFLAC 131
Query: 414 SPPHRRCRHGHKPSHH 367
SPP R RH +P H
Sbjct: 132 SPPLLRRRHSGEPLAH 147
>09_04_0220 - 15813809-15815380
Length = 523
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = -2
Query: 320 ELALKVSSIIGTRVYVFDPSCYFSTPPFDTV----LYDNIRMVLKDNKTALLSASIQASL 153
EL V+ ++G F P CYF + + +YD +++ L + A + S
Sbjct: 29 ELRAAVARLLGRATRAFSPYCYFDVTETEGMGTNEIYDAVQLYLSSSAAPAAGARLTLSR 88
Query: 152 P 150
P
Sbjct: 89 P 89
>03_02_0253 -
6839543-6839623,6839725-6839805,6839935-6839976,
6840604-6840695,6840789-6840858,6841645-6841737,
6841926-6842002,6842614-6842800
Length = 240
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 640 RXNIHFHQSPDAVXEGVRARGKASVVIRGSISVSHPLVT 524
+ ++FH+ PD V E + G + G + V HPL +
Sbjct: 171 KAEVYFHKIPDEVVESLIEEGDV-FYVAGGLLVEHPLTS 208
>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
Length = 519
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 473 DSSFTWK*GGETPLXMPSDEGVRYADGASDDNGGFTPGANSF 598
D S W ++ P+D G R G+ GG P A+SF
Sbjct: 150 DESGNWSLNKKSFTPSPADSGARSRYGSLGGGGGGAPAASSF 191
>01_05_0014 - 17162664-17163500
Length = 278
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = -1
Query: 579 VKPPLSSEAPSAYLTPSSLGMXKGVSPP---YFQVNDESQASRLISRHSTHTPLPSS 418
+K + ++P+ TP LG+ K PP Y ++ +++T T PS+
Sbjct: 87 IKTKIRGDSPARQPTPGELGLLKAAPPPAERYVGTLFTKAGDEVLHKYTTPTATPST 143
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = -1
Query: 573 PPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISRHSTHTPLPSSNSPPH 403
PP +++P LTP +G SPP S S+ TP P S+ P H
Sbjct: 875 PPPETKSPPT-LTPEISPPPEGKSPPSHTPESSSPPSK--ESEPPPTPTPKSSPPSH 928
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = -1
Query: 585 PGVKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISRHSTHTPLPSSNSPP 406
P PP + P A +PSS G PP Q++ R R S P + +P
Sbjct: 61 PSPPPPFRQKVPVATYSPSSQG-----QPPQQQMHPAPTPVR--RRRSCDAPRSPTIAPE 113
Query: 405 HRR 397
HRR
Sbjct: 114 HRR 116
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 446 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 357
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = -1
Query: 615 PXTPX*KEFAPGVKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISRHSTH 436
P P + P + PP +S P + P V+PP QA S HS
Sbjct: 202 PPYPPPQRSLPAI-PPSTSGVPRESVKPP-------VAPPIIAQAPRQQALAPSSDHSNG 253
Query: 435 TPLPSSN-SPPHR 400
+P +N SPPH+
Sbjct: 254 NSVPPANTSPPHK 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,472,332
Number of Sequences: 37544
Number of extensions: 381933
Number of successful extensions: 1223
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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