Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_B17
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    31   1.1  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    31   1.4  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   4.4  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    29   5.8  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    29   5.8  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   5.8  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   5.8  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    29   5.8  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   5.8  
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    29   5.8  
AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase assoc...    29   5.8  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    25   6.7  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    28   7.7  

>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/53 (30%), Positives = 16/53 (30%)
 Frame = +3

Query: 450  PPPPPPXXXXFXXXXPPPXXXXXXXXXXXXXXXNFXXXPPPPXXKKXXXXPPP 608
            PPPPPP         PPP                    PPPP        PPP
Sbjct: 1342 PPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVP--LPVPPPPPLFSPSMILPPP 1392


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +3

Query: 390 PPPPXXXFFFFXKKKKXRXXPPPPPPXXXXFXXXXPPP 503
           PPPP                PPPPPP         PPP
Sbjct: 542 PPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPP 579


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/62 (27%), Positives = 18/62 (29%)
 Frame = +3

Query: 390 PPPPXXXFFFFXKKKKXRXXPPPPPPXXXXFXXXXPPPXXXXXXXXXXXXXXXNFXXXPP 569
           PPPP                PPPPPP         PPP               +    PP
Sbjct: 521 PPPPMPGM---APLSTGAPTPPPPPPVGMANGGPPPPPPLPLDLLKGAVAGLKSVPGGPP 577

Query: 570 PP 575
           PP
Sbjct: 578 PP 579


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/73 (27%), Positives = 20/73 (27%)
 Frame = +3

Query: 390 PPPPXXXFFFFXKKKKXRXXPPPPPPXXXXFXXXXPPPXXXXXXXXXXXXXXXNFXXXPP 569
           PPPP   F            PPPPPP         PPP                    P 
Sbjct: 318 PPPPPSRF----GPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPA 373

Query: 570 PPXXKKXXXXPPP 608
           PP        PPP
Sbjct: 374 PPSGHGMIPPPPP 386


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/73 (27%), Positives = 20/73 (27%)
 Frame = +3

Query: 390 PPPPXXXFFFFXKKKKXRXXPPPPPPXXXXFXXXXPPPXXXXXXXXXXXXXXXNFXXXPP 569
           PPPP   F            PPPPPP         PPP                    P 
Sbjct: 328 PPPPPSRF----GPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPA 383

Query: 570 PPXXKKXXXXPPP 608
           PP        PPP
Sbjct: 384 PPSGHGMIPPPPP 396


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +3

Query: 390 PPPPXXXFFFFXKKKKXRXXPPPPPPXXXXFXXXXPPP 503
           PPPP   F            PPPPPP          PP
Sbjct: 613 PPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPP 650


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +3

Query: 390 PPPPXXXFFFFXKKKKXRXXPPPPPPXXXXFXXXXPPP 503
           PPPP   F            PPPPPP          PP
Sbjct: 439 PPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPP 476


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 450 PPPPPPXXXXFXXXXPPP 503
           PPPPPP    F    PPP
Sbjct: 770 PPPPPPPPGGFKGGPPPP 787



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +3

Query: 450 PPPPPPXXXXFXXXXPPPXXXXXXXXXXXXXXXNFXXXPPPPXXKKXXXXPPP 608
           PPPPPP         PPP                    PPPP   K    PPP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPP-------PPPPGGFKGGPPPPP 788


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 450 PPPPPPXXXXFXXXXPPP 503
           PPPPPP    F    PPP
Sbjct: 770 PPPPPPPPGGFKGGPPPP 787



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +3

Query: 450 PPPPPPXXXXFXXXXPPPXXXXXXXXXXXXXXXNFXXXPPPPXXKKXXXXPPP 608
           PPPPPP         PPP                    PPPP   K    PPP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPP-------PPPPGGFKGGPPPPP 788


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/43 (32%), Positives = 16/43 (37%)
 Frame = +3

Query: 375 KKKXXPPPPXXXFFFFXKKKKXRXXPPPPPPXXXXFXXXXPPP 503
           K    PPPP        ++      PPPPPP         PPP
Sbjct: 64  KATPPPPPPPPPLISILQQAP----PPPPPPPPPTLKAPPPPP 102


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 450 PPPPPPXXXXFXXXXPPP 503
           PPPPPP    F    PPP
Sbjct: 353 PPPPPPPPGGFKGGPPPP 370



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +3

Query: 450 PPPPPPXXXXFXXXXPPPXXXXXXXXXXXXXXXNFXXXPPPPXXKKXXXXPPP 608
           PPPPPP         PPP                    PPPP   K    PPP
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPP-------PPPPGGFKGGPPPPP 371


>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
            protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 450  PPPPPPXXXXFXXXXPPP 503
            PPPPPP    F    PPP
Sbjct: 1014 PPPPPPPADFFANIAPPP 1031


>AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform b protein.
          Length = 495

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 450 PPPPPPXXXXFXXXXPPP 503
           PPPPPP    F    PPP
Sbjct: 253 PPPPPPPADFFANIAPPP 270


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 24.6 bits (51), Expect(2) = 6.7
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 450 PPPPPPXXXXFXXXXPPP 503
           PPPPPP         PPP
Sbjct: 134 PPPPPPHYPPPPPHYPPP 151



 Score = 22.2 bits (45), Expect(2) = 6.7
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = +3

Query: 390 PPPPXXXFFFFXKKKKXRXXPPPPPP 467
           PPP              +  PPPPPP
Sbjct: 112 PPPAPYPQHAVPAPAPYQQQPPPPPP 137


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/53 (30%), Positives = 16/53 (30%)
 Frame = +3

Query: 450 PPPPPPXXXXFXXXXPPPXXXXXXXXXXXXXXXNFXXXPPPPXXKKXXXXPPP 608
           PPPPPP         PPP                    PPPP        PPP
Sbjct: 31  PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCP---PPPPPPPPPMCPPPPPP 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,714,386
Number of Sequences: 27780
Number of extensions: 232581
Number of successful extensions: 1268
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)