Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_B16
         (1170 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856...    29   7.1  
03_06_0100 - 31647506-31647664,31647752-31647835,31647933-316480...    29   9.4  

>03_03_0038 +
           13984525-13984917,13985351-13985429,13985535-13985628,
           13985712-13985844
          Length = 232

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -3

Query: 517 PPPPPXXXGGXXKKKK 470
           PPPPP   GG  KKKK
Sbjct: 40  PPPPPQLRGGETKKKK 55



 Score = 28.7 bits (61), Expect = 9.4
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 519 PPPPPXXXXGGXXKKKK 469
           PPPPP    GG  KKKK
Sbjct: 39  PPPPPPQLRGGETKKKK 55


>03_06_0100 -
           31647506-31647664,31647752-31647835,31647933-31648089,
           31648181-31648446,31648524-31648796,31648874-31648985,
           31649112-31649331,31649476-31649899
          Length = 564

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
 Frame = +3

Query: 504 GGGGGXXXXFFKK---KKKKXXXFFXLXPPPXXKXXGGGG 614
           GGGGG           K KK   FF   PP   +  GGGG
Sbjct: 48  GGGGGVKREAIPAGTGKAKKQVVFFDAAPPVSQRGGGGGG 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,406,851
Number of Sequences: 37544
Number of extensions: 240900
Number of successful extensions: 1044
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3573221976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)