Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_B13
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    28   1.3  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    27   4.0  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = -1

Query: 356 DLLNEVGVDXLTTRKLAERLGFSSRRFTGTS 264
           DLLN +G      +KLAE LG++SRRF  ++
Sbjct: 903 DLLNVIG--RKIWKKLAEILGYTSRRFLSSA 931


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 24/80 (30%), Positives = 34/80 (42%)
 Frame = -1

Query: 332 DXLTTRKLAERLGFSSRRFTGTSGXQSGRCSTHWPKPCWAENHTHSVPRADDDWRSFLIG 153
           D  T+++  E LG+  R   G    + G CS+ W  P + E  T SVP +  +    L  
Sbjct: 392 DVETSKEYFE-LGY--RFHDGAVYVERGVCSSSWKYPLYPERCTSSVPPSSYEDNYILEI 448

Query: 152 NARSFRQALLAYRQHNGTMC 93
            A      +  Y Q  G MC
Sbjct: 449 EAVVDHSIIEVYLQ-GGIMC 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,836,677
Number of Sequences: 5004
Number of extensions: 28561
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)