Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_B12
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 136 3e-33
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 133 2e-32
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 40 3e-04
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 28 1.2
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.2
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.0
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 6.6
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 136 bits (329), Expect = 3e-33
Identities = 64/99 (64%), Positives = 76/99 (76%)
Frame = -1
Query: 617 RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 438
RL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLA
Sbjct: 122 RLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLA 181
Query: 437 REVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 321
REVLR+RG L R WDV+ DL+FYRDPEE E++E+ K
Sbjct: 182 REVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
Score = 64.9 bits (151), Expect = 1e-11
Identities = 30/44 (68%), Positives = 34/44 (77%)
Frame = -3
Query: 750 VI*SRPFGQRAVLKFAAHTGATXIAERFTPGAFTNQIQAAFREP 619
V+ +R +G RAVLKFAAHTGAT IA RFTPG FTN I +REP
Sbjct: 78 VVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREP 121
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 133 bits (322), Expect = 2e-32
Identities = 63/97 (64%), Positives = 75/97 (77%)
Frame = -1
Query: 617 RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 438
RL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLA
Sbjct: 123 RLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLA 182
Query: 437 REVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
REVLRLRG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 183 REVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
Score = 69.7 bits (163), Expect = 4e-13
Identities = 33/44 (75%), Positives = 35/44 (79%)
Frame = -3
Query: 750 VI*SRPFGQRAVLKFAAHTGATXIAERFTPGAFTNQIQAAFREP 619
VI SRP+G RAVLKFAAHTGAT IA RFTPG FTN I +REP
Sbjct: 79 VISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREP 122
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 40.3 bits (90), Expect = 3e-04
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = -1
Query: 656 LLLTRSKLHSVNLRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 477
L+ T K V L+++L+P ++ EA ++P I + +TD+ R V IP N
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227
Query: 476 SSHSIGLMWWLLAR 435
S L+ LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = -1
Query: 746 FNHAXSVSVLY*SLPRTPVLRXLRNVSHQVLLLT-----RSKLHSVNLRLLIVLDPAQDH 582
F + + V+ S P TP LR L+ S LLT R+KL+S + +L+ + P +
Sbjct: 254 FGNFADILVINVSSPNTPGLRNLQKKSALSTLLTAVVSERNKLNSPHPPVLVKIAPDLNE 313
Query: 581 QPITEASYV 555
+ +T+ + V
Sbjct: 314 EELTDIADV 322
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 572 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 462
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 409 FPVTSAGML--WLICSSTVTLKKVKRM 335
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,641
Number of Sequences: 5004
Number of extensions: 56711
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -